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L1

Euk-Vir

Macaca_mulatta_papillomavirus_7

L1__YP_009553277__Macaca_mulatta_papillomavirus_7__2364644

Identity

Accession:
YP_009553277 ↗
Protein ID:
L1
Kingdom:
euk

Quality

84.1 mean pLDDT

Taxonomy

Shotokuvirae› Cossaviricota› Papovaviricetes› Zurhausenvirales› Papillomaviridae› Gammapapillomavirus› Macaca_mulatta_papillomavirus_7

TaxID: 2364644

Cluster

View cluster (154 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 27-66_98-117_176-192_233-247_376-397
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00500.25 best Late_protein_L1 48.0 1.20e-12 36.0% 8.1%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dzlA00 2.60.175.20 Mainly Beta › Sandwich › Polyomavirus Vp1; Chain A › Major capsid L1 (late) superfamily, Papillomavirus 0.97 95.0 5.99e-01 100.0% 78.9%
5v7qT00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.57 25.0 2.74e-01 98.2% 44.9%
D2 medium residues 67-97_152-175_313-358
PDB
Domain cluster: rep: L1__YP_009508760__Peromyscus_papillomavirus_1__1074206__D104-118_156-168_236-258_310-344
Pfam (3)
AccessionNameScoreE-valueQ covHMM cov
PF00500.25 best Late_protein_L1 72.1 5.90e-20 45.5% 8.6%
PF00500.25 Late_protein_L1 40.5 2.30e-10 32.7% 6.2%
PF00500.25 Late_protein_L1 28.5 9.90e-07 27.7% 5.2%
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dzlA00 2.60.175.20 Mainly Beta › Sandwich › Polyomavirus Vp1; Chain A › Major capsid L1 (late) superfamily, Papillomavirus 0.97 94.0 5.83e-01 100.0% 62.2%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4022089 323.1.1.0 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.51 29.0 2.52e-01 100.0% 32.9%
D3 medium residues 118-151_248-312
PDB
Domain cluster: rep: L1__YP_009345082__Eidolon_helvum_papillomavirus_2__1335476__D106-161_251-269_292-310
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00500.25 best Late_protein_L1 43.4 3.00e-11 65.7% 11.5%