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L1

Euk-Vir

Gammapapillomavirus_sp.

L1__YP_009553515__Gammapapillomavirus_sp.__2049444

Identity

Accession:
YP_009553515 ↗
Protein ID:
L1
Kingdom:
euk

Quality

84.6 mean pLDDT

Taxonomy

Shotokuvirae› Cossaviricota› Papovaviricetes› Zurhausenvirales› Papillomaviridae› Gammapapillomavirus› Gammapapillomavirus_sp.

TaxID: 2049444

Cluster

View cluster (154 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 25-37_82-103_386-415_467-484
PDB
Domain cluster: rep: L1__YP_009408622__Felis_catus_papillomavirus_type_5__2025339__D26-43_369-402_442-465
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF00500.25 best Late_protein_L1 28.7 8.80e-07 39.8% 6.0%
PF00500.25 Late_protein_L1 27.1 2.70e-06 36.1% 4.8%
D2 medium residues 38-81_104-116_146-163_242-264_318-385_454-466
PDB
Domain cluster: rep: L1_capsid_protein__YP_009272579__Bos_taurus_papillomavirus_13__1887213__D32-107_305-401_440-463
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF00500.25 best Late_protein_L1 89.3 3.70e-25 45.8% 15.1%
PF00500.25 Late_protein_L1 48.1 1.20e-12 29.0% 8.5%
D3 medium residues 164-241_288-317
PDB
Domain cluster: rep: L1__YP_009552560__Gammapapillomavirus_sp.__2049444__D159-250
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF00500.25 best Late_protein_L1 120.2 1.50e-34 75.0% 15.5%
PF00500.25 Late_protein_L1 27.9 1.50e-06 29.6% 6.2%