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L1
Euk-VirGammapapillomavirus_sp.
L1__YP_009553521__Gammapapillomavirus_sp.__2049444
Identity
- Accession:
- YP_009553521 ↗
- Protein ID:
- L1
- Kingdom:
- euk
Quality
83.6
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Zurhausenvirales›
Papillomaviridae›
Gammapapillomavirus›
Gammapapillomavirus_sp.
TaxID: 2049444
Cluster
View cluster (154 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 118-271_290-304
Domain cluster:
rep: late_protein_L1__NP_077122__Alphapapillomavirus_4__337043__D129-185_198-277_298-367
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 226.5 | 9.20e-67 | 99.4% | 31.6% |
D2
medium
residues 37-116_314-420
Domain cluster:
rep: L1_capsid_protein__YP_009272579__Bos_taurus_papillomavirus_13__1887213__D32-107_305-401_440-463
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 155.1 | 4.00e-45 | 58.3% | 20.7% |
| PF00500.25 | Late_protein_L1 | 131.0 | 8.40e-38 | 43.3% | 15.9% |