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L1
Euk-VirTursiops_truncatus_papillomavirus_2
L1__YP_656480__Tursiops_truncatus_papillomavirus_2__936060
Identity
- Accession:
- YP_656480 ↗
- Protein ID:
- L1
- Kingdom:
- euk
Quality
83.7
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Zurhausenvirales›
Papillomaviridae›
Upsilonpapillomavirus›
Tursiops_truncatus_papillomavirus_2
TaxID: 936060
Cluster
View cluster (154 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 110-226_249-265_285-299
Domain cluster:
rep: late_protein_L1__NP_077122__Alphapapillomavirus_4__337043__D129-185_198-277_298-367
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 150.8 | 8.10e-44 | 80.5% | 23.3% |
D2
medium
residues 12-26_379-412_463-479
Domain cluster:
rep: L1__YP_009408622__Felis_catus_papillomavirus_type_5__2025339__D26-43_369-402_442-465
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 32.5 | 6.10e-08 | 77.3% | 6.8% |
D3
medium
residues 27-108_227-248_314-353_365-378_451-462
Domain cluster:
rep: L1_capsid_protein__YP_009272579__Bos_taurus_papillomavirus_13__1887213__D32-107_305-401_440-463
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 114.8 | 7.00e-33 | 49.4% | 16.3% |
| PF00500.25 | Late_protein_L1 | 70.5 | 1.80e-19 | 41.2% | 13.5% |