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L1
Euk-VirMicromys_minutus_papillomavirus_1
L1__YP_873945__Micromys_minutus_papillomavirus_1__10568
Identity
- Accession:
- YP_873945 ↗
- Protein ID:
- L1
- Kingdom:
- euk
Quality
82.8
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Zurhausenvirales›
Papillomaviridae›
Pipapillomavirus›
Micromys_minutus_papillomavirus_1
TaxID: 10568
Cluster
View cluster (154 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 32-118_317-418_453-481
Domain cluster:
rep: L1_capsid_protein__YP_009272579__Bos_taurus_papillomavirus_13__1887213__D32-107_305-401_440-463
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 163.5 | 1.20e-47 | 48.2% | 20.5% |
| PF00500.25 | Late_protein_L1 | 142.6 | 2.60e-41 | 40.4% | 17.7% |
| PF00500.25 | Late_protein_L1 | 37.5 | 1.80e-09 | 14.2% | 5.8% |
D2
high
residues 124-155_167-270_293-306
Domain cluster:
rep: late_protein_L1__NP_077122__Alphapapillomavirus_4__337043__D129-185_198-277_298-367
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 199.5 | 1.40e-58 | 100.0% | 32.2% |