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L1_capsid_protein
Euk-VirBos_taurus_papillomavirus_16
L1_capsid_protein__YP_009272586__Bos_taurus_papillomavirus_16__1887214
Identity
- Accession:
- YP_009272586 ↗
- Protein ID:
- L1_capsid_protein
- Kingdom:
- euk
Quality
81.1
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Zurhausenvirales›
Papillomaviridae›
Dyokappapapillomavirus›
Bos_taurus_papillomavirus_16
TaxID: 1887214
Cluster
View cluster (154 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 117-130_142-241_257-292
Domain cluster:
rep: late_protein_L1__NP_077122__Alphapapillomavirus_4__337043__D129-185_198-277_298-367
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 160.5 | 9.50e-47 | 100.0% | 28.8% |
D2
medium
residues 68-95_315-346_359-387_446-474
Domain cluster:
rep: L1__YP_009553598__Leptonychotes_weddellii_papillomavirus_6__2077307__D335-363_402-436_478-504
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 67.4 | 1.60e-18 | 55.1% | 13.9% |
| PF00500.25 | Late_protein_L1 | 28.1 | 1.30e-06 | 24.6% | 5.6% |
D3
medium
residues 96-114_242-256_296-314_388-409