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L1_capsid_protein
Euk-VirBos_taurus_papillomavirus_17
L1_capsid_protein__YP_009272592__Bos_taurus_papillomavirus_17__1887215
Identity
- Accession:
- YP_009272592 ↗
- Protein ID:
- L1_capsid_protein
- Kingdom:
- euk
Quality
82.4
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Zurhausenvirales›
Papillomaviridae›
Xipapillomavirus›
Bos_taurus_papillomavirus_17
TaxID: 1887215
Cluster
View cluster (154 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 120-175_187-269_290-301
Domain cluster:
rep: late_protein_L1__NP_077122__Alphapapillomavirus_4__337043__D129-185_198-277_298-367
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 204.1 | 5.90e-60 | 99.3% | 30.4% |
D2
medium
residues 29-114_306-329_376-413_449-466
Domain cluster:
rep: L1_capsid_protein__YP_009272579__Bos_taurus_papillomavirus_13__1887213__D32-107_305-401_440-463
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 131.1 | 8.00e-38 | 51.8% | 17.1% |
| PF00500.25 | Late_protein_L1 | 42.6 | 5.10e-11 | 25.9% | 7.8% |
| PF00500.25 | Late_protein_L1 | 31.1 | 1.60e-07 | 14.5% | 4.8% |