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L1_capsid_protein
Euk-VirBos_taurus_papillomavirus_18
L1_capsid_protein__YP_009272598__Bos_taurus_papillomavirus_18__1887216
Identity
- Accession:
- YP_009272598 ↗
- Protein ID:
- L1_capsid_protein
- Kingdom:
- euk
Quality
84.1
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Zurhausenvirales›
Papillomaviridae›
Dyokappapapillomavirus›
Bos_taurus_papillomavirus_18
TaxID: 1887216
Cluster
View cluster (154 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 24-109_309-347_360-404_441-472
Domain cluster:
rep: L1_capsid_protein__YP_009272579__Bos_taurus_papillomavirus_13__1887213__D32-107_305-401_440-463
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 124.0 | 1.10e-35 | 43.1% | 17.7% |
| PF00500.25 | Late_protein_L1 | 105.7 | 3.90e-30 | 42.6% | 19.1% |
| PF00500.25 | Late_protein_L1 | 30.3 | 2.80e-07 | 16.3% | 5.8% |
D2
high
residues 115-263_282-295
Domain cluster:
rep: late_protein_L1__NP_077122__Alphapapillomavirus_4__337043__D129-185_198-277_298-367
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 204.6 | 4.00e-60 | 98.2% | 30.4% |