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L1_capsid_protein
Euk-VirBos_taurus_papillomavirus_19
L1_capsid_protein__YP_009272604__Bos_taurus_papillomavirus_19__1887217
Identity
- Accession:
- YP_009272604 ↗
- Protein ID:
- L1_capsid_protein
- Kingdom:
- euk
Quality
82.3
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Zurhausenvirales›
Papillomaviridae›
Dyoxipapillomavirus›
Bos_taurus_papillomavirus_19
TaxID: 1887217
Cluster
View cluster (154 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 14-108_312-333_368-415_449-478
Domain cluster:
rep: L1_capsid_protein__YP_009272579__Bos_taurus_papillomavirus_13__1887213__D32-107_305-401_440-463
Pfam (4)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 150.8 | 8.60e-44 | 50.3% | 19.5% |
| PF00500.25 | Late_protein_L1 | 63.0 | 3.40e-17 | 26.7% | 9.9% |
| PF00500.25 | Late_protein_L1 | 33.8 | 2.40e-08 | 15.9% | 6.0% |
| PF00500.25 | Late_protein_L1 | 31.8 | 9.90e-08 | 12.3% | 4.4% |
D2
medium
residues 109-130_142-268_288-311_334-352
Domain cluster:
rep: late_protein_L1__NP_077122__Alphapapillomavirus_4__337043__D129-185_198-277_298-367
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 236.1 | 1.20e-69 | 90.6% | 39.8% |