L1_capsid_protein

Euk-Vir

Bos_taurus_papillomavirus_21

L1_capsid_protein__YP_009272618__Bos_taurus_papillomavirus_21__1887219

Identity

79.9 mean pLDDT

Shotokuvirae› Cossaviricota› Papovaviricetes› Zurhausenvirales› Papillomaviridae› Dyoxipapillomavirus› Bos_taurus_papillomavirus_21

TaxID: 1887219

View cluster (154 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 29-107_334-409_446-467

PDB

Domain cluster: rep: L1_capsid_protein__YP_009272579__Bos_taurus_papillomavirus_13__1887213__D32-107_305-401_440-463

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00500.25 best	Late_protein_L1	107.0	1.60e-30	45.2%	16.1%
PF00500.25	Late_protein_L1	90.1	2.00e-25	44.6%	15.1%

D2 medium residues 108-149_162-238_250-266_288-305

PDB

Domain cluster: rep: late_protein_L1__NP_077122__Alphapapillomavirus_4__337043__D129-185_198-277_298-367

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00500.25 best	Late_protein_L1	129.7	2.10e-37	100.0%	33.4%

D3 medium residues 150-161_239-249_306-333

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00500.25 best	Late_protein_L1	39.3	5.10e-10	66.7%	5.6%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1kshB00	2.70.50.40	Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › GMP phosphodiesterase, delta subunit	0.53	43.0	3.22e-01	100.0%	33.8%
6rk7B02	3.30.300.10	Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 ›	0.51	36.0	2.85e-01	78.4%	94.5%