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L1_protein
Euk-VirIotapapillomavirus_1
L1_protein__NP_042019__Iotapapillomavirus_1__10567
Identity
- Accession:
- NP_042019 ↗
- Protein ID:
- L1_protein
- Kingdom:
- euk
Quality
81.3
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Zurhausenvirales›
Papillomaviridae›
Iotapapillomavirus›
Iotapapillomavirus_1
TaxID: 10567
Cluster
View cluster (154 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 53-96_124-139_345-359_389-439_488-500
Domain cluster:
rep: L1_capsid_protein__YP_009272579__Bos_taurus_papillomavirus_13__1887213__D32-107_305-401_440-463
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 67.2 | 1.90e-18 | 38.9% | 10.5% |
| PF00500.25 | Late_protein_L1 | 55.7 | 5.50e-15 | 33.1% | 9.5% |
D2
medium
residues 97-123_140-201_216-295_317-344_360-388
Domain cluster:
rep: late_protein_L1__NP_077122__Alphapapillomavirus_4__337043__D129-185_198-277_298-367
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 242.8 | 1.10e-71 | 77.0% | 40.0% |
| PF00500.25 | Late_protein_L1 | 46.4 | 3.60e-12 | 25.7% | 14.1% |