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L1_protein
Euk-VirOmikronpapillomavirus_1
L1_protein__NP_542623__Omikronpapillomavirus_1__82676
Identity
- Accession:
- NP_542623 ↗
- Protein ID:
- L1_protein
- Kingdom:
- euk
Quality
81.4
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Zurhausenvirales›
Papillomaviridae›
Omikronpapillomavirus›
Omikronpapillomavirus_1
TaxID: 82676
Cluster
View cluster (154 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 30-117_247-258_356-421_465-491
Domain cluster:
rep: L1_capsid_protein__YP_009272579__Bos_taurus_papillomavirus_13__1887213__D32-107_305-401_440-463
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 137.1 | 1.20e-39 | 49.2% | 17.7% |
| PF00500.25 | Late_protein_L1 | 74.5 | 1.10e-20 | 38.3% | 13.1% |
| PF00500.25 | Late_protein_L1 | 28.2 | 1.30e-06 | 14.5% | 5.4% |
D2
medium
residues 118-135_149-178_192-246_259-271_306-355
Domain cluster:
rep: late_protein_L1__NP_077122__Alphapapillomavirus_4__337043__D129-185_198-277_298-367
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 140.2 | 1.40e-40 | 71.1% | 30.4% |
| PF00500.25 | Late_protein_L1 | 90.3 | 1.90e-25 | 31.3% | 10.1% |