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L1_protein
Euk-VirHuman_papillomavirus_116
L1_protein__YP_003084352__Human_papillomavirus_116__915428
Identity
- Accession:
- YP_003084352 ↗
- Protein ID:
- L1_protein
- Kingdom:
- euk
Quality
83.0
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Zurhausenvirales›
Papillomaviridae›
Gammapapillomavirus›
Human_papillomavirus_116
TaxID: 915428
Cluster
View cluster (154 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 119-304
Domain cluster:
rep: late_protein_L1__NP_077122__Alphapapillomavirus_4__337043__D129-185_198-277_298-367
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 231.5 | 2.80e-68 | 100.0% | 36.2% |
D2
medium
residues 24-43_66-116_314-346_388-416_456-486
Domain cluster:
rep: L1_capsid_protein__YP_009272579__Bos_taurus_papillomavirus_13__1887213__D32-107_305-401_440-463
Pfam (4)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 83.1 | 2.80e-23 | 32.3% | 10.3% |
| PF00500.25 | Late_protein_L1 | 52.1 | 7.00e-14 | 21.3% | 6.6% |
| PF00500.25 | Late_protein_L1 | 33.7 | 2.70e-08 | 20.1% | 6.0% |
| PF00500.25 | Late_protein_L1 | 27.5 | 2.00e-06 | 19.5% | 5.8% |