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L1_protein
Euk-VirPhocoena_phocoena_papillomavirus_1
L1_protein__YP_006470627__Phocoena_phocoena_papillomavirus_1__706525
Identity
- Accession:
- YP_006470627 ↗
- Protein ID:
- L1_protein
- Kingdom:
- euk
Quality
81.8
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Zurhausenvirales›
Papillomaviridae›
Omikronpapillomavirus›
Phocoena_phocoena_papillomavirus_1
TaxID: 706525
Cluster
View cluster (154 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 122-245_261-311
Domain cluster:
rep: late_protein_L1__NP_077122__Alphapapillomavirus_4__337043__D129-185_198-277_298-367
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 195.8 | 1.90e-57 | 100.0% | 36.2% |
D2
medium
residues 24-116_246-260_324-347_383-424_462-490
Domain cluster:
rep: L1_capsid_protein__YP_009272579__Bos_taurus_papillomavirus_13__1887213__D32-107_305-401_440-463
Pfam (4)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 140.1 | 1.50e-40 | 52.2% | 20.3% |
| PF00500.25 | Late_protein_L1 | 52.1 | 6.80e-14 | 22.7% | 8.5% |
| PF00500.25 | Late_protein_L1 | 32.4 | 6.60e-08 | 15.3% | 6.0% |
| PF00500.25 | Late_protein_L1 | 36.8 | 3.00e-09 | 14.3% | 5.0% |