L1_protein

Euk-Vir

Phocoena_phocoena_papillomavirus_2

L1_protein__YP_006470633__Phocoena_phocoena_papillomavirus_2__706526

Identity

80.1 mean pLDDT

Shotokuvirae› Cossaviricota› Papovaviricetes› Zurhausenvirales› Papillomaviridae› Upsilonpapillomavirus› Phocoena_phocoena_papillomavirus_2

TaxID: 706526

View cluster (154 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 51-66_97-123_402-420

PDB

Domain cluster: rep: L1__YP_009315925__Equus_caballus_papillomavirus_8__1912759__D72-106_315-329_368-402

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00500.25 best	Late_protein_L1	33.7	2.60e-08	51.6%	6.0%

D2 medium residues 67-82_338-374_387-401_421-433

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00500.25 best	Late_protein_L1	65.7	5.20e-18	86.4%	12.9%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2l66A00	2.10.260.10	Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D ›	0.55	24.0	2.91e-01	75.3%	56.6%
2yvsA02	3.30.70.2560	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.54	26.0	2.94e-01	84.0%	59.3%

D3 medium residues 83-96_124-191_204-286_311-337

PDB

Domain cluster: rep: late_protein_L1__NP_077122__Alphapapillomavirus_4__337043__D129-185_198-277_298-367

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00500.25 best	Late_protein_L1	225.1	2.50e-66	93.2%	41.9%