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L1_protein
Euk-VirHuman_papillomavirus_179
L1_protein__YP_008433331__Human_papillomavirus_179__1472342
Identity
- Accession:
- YP_008433331 ↗
- Protein ID:
- L1_protein
- Kingdom:
- euk
Quality
83.8
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Zurhausenvirales›
Papillomaviridae›
Gammapapillomavirus›
Human_papillomavirus_179
TaxID: 1472342
Cluster
View cluster (154 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 35-113_311-417_452-481
Domain cluster:
rep: L1_capsid_protein__YP_009272579__Bos_taurus_papillomavirus_13__1887213__D32-107_305-401_440-463
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 147.1 | 1.10e-42 | 50.9% | 20.7% |
| PF00500.25 | Late_protein_L1 | 110.8 | 1.10e-31 | 36.6% | 15.3% |
| PF00500.25 | Late_protein_L1 | 29.2 | 6.10e-07 | 15.3% | 6.2% |
D2
medium
residues 114-135_147-238
Domain cluster:
rep: L1__YP_009552560__Gammapapillomavirus_sp.__2049444__D159-250
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 148.4 | 4.40e-43 | 100.0% | 25.6% |
D3
medium
residues 136-146_260-307
Domain cluster:
rep: L1__YP_004646337__Macaca_fascicularis_papillomavirus_2__915424__D257-309