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L1_protein
Euk-VirMesocricetus_auratus_papillomavirus_1
L1_protein__YP_008720077__Mesocricetus_auratus_papillomavirus_1__1408129
Identity
- Accession:
- YP_008720077 ↗
- Protein ID:
- L1_protein
- Kingdom:
- euk
Quality
84.0
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Zurhausenvirales›
Papillomaviridae›
Pipapillomavirus›
Mesocricetus_auratus_papillomavirus_1
TaxID: 1408129
Cluster
View cluster (154 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 30-109_311-408_443-472
Domain cluster:
rep: L1_capsid_protein__YP_009272579__Bos_taurus_papillomavirus_13__1887213__D32-107_305-401_440-463
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 145.9 | 2.50e-42 | 48.6% | 20.1% |
| PF00500.25 | Late_protein_L1 | 132.4 | 3.10e-38 | 38.9% | 16.3% |
| PF00500.25 | Late_protein_L1 | 36.7 | 3.30e-09 | 14.9% | 6.0% |
D2
high
residues 115-298
Domain cluster:
rep: late_protein_L1__NP_077122__Alphapapillomavirus_4__337043__D129-185_198-277_298-367
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 262.3 | 1.30e-77 | 100.0% | 36.2% |