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L1_protein
Euk-VirHuman_papillomavirus_178
L1_protein__YP_009022063__Human_papillomavirus_178__1478160
Identity
- Accession:
- YP_009022063 ↗
- Protein ID:
- L1_protein
- Kingdom:
- euk
Quality
84.9
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Zurhausenvirales›
Papillomaviridae›
Gammapapillomavirus›
Human_papillomavirus_178
TaxID: 1478160
Cluster
View cluster (154 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 118-273_291-303
Domain cluster:
rep: late_protein_L1__NP_077122__Alphapapillomavirus_4__337043__D129-185_198-277_298-367
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 249.5 | 1.00e-73 | 99.4% | 31.8% |
D2
medium
residues 32-61_333-355
Domain cluster:
representative
D3
medium
residues 62-105_314-332_376-419_457-489
Domain cluster:
rep: L1_capsid_protein__YP_009272579__Bos_taurus_papillomavirus_13__1887213__D32-107_305-401_440-463
Pfam (4)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 52.4 | 5.80e-14 | 32.9% | 8.8% |
| PF00500.25 | Late_protein_L1 | 64.9 | 9.10e-18 | 31.4% | 8.8% |
| PF00500.25 | Late_protein_L1 | 38.8 | 7.50e-10 | 25.7% | 6.6% |
| PF00500.25 | Late_protein_L1 | 32.0 | 8.80e-08 | 15.7% | 4.2% |