←Back to structures
L1_protein
Euk-VirRupicapra_rupicapra_papillomavirus_1
L1_protein__YP_009022083__Rupicapra_rupicapra_papillomavirus_1__1163708
Identity
- Accession:
- YP_009022083 ↗
- Protein ID:
- L1_protein
- Kingdom:
- euk
Quality
82.9
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Zurhausenvirales›
Papillomaviridae›
Dyokappapapillomavirus›
Rupicapra_rupicapra_papillomavirus_1
TaxID: 1163708
Cluster
View cluster (154 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 24-111_307-405_441-471
Domain cluster:
rep: L1_capsid_protein__YP_009272579__Bos_taurus_papillomavirus_13__1887213__D32-107_305-401_440-463
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 132.6 | 2.80e-38 | 48.2% | 20.7% |
| PF00500.25 | Late_protein_L1 | 128.2 | 6.10e-37 | 40.8% | 17.7% |
| PF00500.25 | Late_protein_L1 | 31.4 | 1.30e-07 | 14.7% | 5.8% |
D2
high
residues 117-243_257-270_284-296
Domain cluster:
rep: late_protein_L1__NP_077122__Alphapapillomavirus_4__337043__D129-185_198-277_298-367
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 164.8 | 4.80e-48 | 96.8% | 29.4% |