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L1_protein
Euk-VirBos_taurus_papillomavirus_12
L1_protein__YP_009175026__Bos_taurus_papillomavirus_12__1070324
Identity
- Accession:
- YP_009175026 ↗
- Protein ID:
- L1_protein
- Kingdom:
- euk
Quality
82.5
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Zurhausenvirales›
Papillomaviridae›
Xipapillomavirus›
Bos_taurus_papillomavirus_12
TaxID: 1070324
Cluster
View cluster (154 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 118-295
Domain cluster:
rep: late_protein_L1__NP_077122__Alphapapillomavirus_4__337043__D129-185_198-277_298-367
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 239.9 | 8.00e-71 | 100.0% | 36.2% |
D2
medium
residues 24-115_339-349_361-406_446-477
Domain cluster:
rep: L1_capsid_protein__YP_009272579__Bos_taurus_papillomavirus_13__1887213__D32-107_305-401_440-463
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 157.2 | 9.40e-46 | 55.8% | 18.5% |
| PF00500.25 | Late_protein_L1 | 62.9 | 3.60e-17 | 33.7% | 12.7% |
| PF00500.25 | Late_protein_L1 | 35.4 | 7.80e-09 | 17.7% | 6.2% |