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L1_protein
Euk-VirHuman_papillomavirus_204
L1_protein__YP_009507317__Human_papillomavirus_204__1650736
Identity
- Accession:
- YP_009507317 ↗
- Protein ID:
- L1_protein
- Kingdom:
- euk
Quality
84.6
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Zurhausenvirales›
Papillomaviridae›
Mupapillomavirus›
Human_papillomavirus_204
TaxID: 1650736
Cluster
View cluster (154 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 24-112_311-410_446-476
Domain cluster:
rep: L1_capsid_protein__YP_009272579__Bos_taurus_papillomavirus_13__1887213__D32-107_305-401_440-463
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 164.1 | 7.80e-48 | 47.7% | 20.5% |
| PF00500.25 | Late_protein_L1 | 156.7 | 1.30e-45 | 40.9% | 17.7% |
| PF00500.25 | Late_protein_L1 | 39.0 | 6.70e-10 | 14.5% | 6.0% |
D2
high
residues 118-153_165-240_256-300
Domain cluster:
rep: late_protein_L1__NP_077122__Alphapapillomavirus_4__337043__D129-185_198-277_298-367
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 164.0 | 8.40e-48 | 100.0% | 36.2% |