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L1_protein
Euk-VirVulpes_vulpes_papillomavirus_1
L1_protein__YP_009507338__Vulpes_vulpes_papillomavirus_1__1163709
Identity
- Accession:
- YP_009507338 ↗
- Protein ID:
- L1_protein
- Kingdom:
- euk
Quality
83.0
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Zurhausenvirales›
Papillomaviridae›
Treisetapapillomavirus›
Vulpes_vulpes_papillomavirus_1
TaxID: 1163709
Cluster
View cluster (154 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 22-61_324-334_368-383_398-411_448-458
Domain cluster:
rep: L1__YP_009408622__Felis_catus_papillomavirus_type_5__2025339__D26-43_369-402_442-465
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 43.2 | 3.50e-11 | 43.5% | 7.2% |
D2
medium
residues 62-112_230-245_308-323_335-367_384-397_459-478
Domain cluster:
rep: L1_capsid_protein__YP_009272579__Bos_taurus_papillomavirus_13__1887213__D32-107_305-401_440-463
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 31.5 | 1.20e-07 | 44.7% | 12.3% |
| PF00500.25 | Late_protein_L1 | 79.7 | 3.10e-22 | 34.7% | 10.3% |
D3
medium
residues 113-172_185-229_246-269_289-307
Domain cluster:
rep: late_protein_L1__NP_077122__Alphapapillomavirus_4__337043__D129-185_198-277_298-367
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 152.8 | 2.00e-44 | 100.0% | 38.6% |