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L1_protein
Euk-VirPudu_puda_papillomavirus_1
L1_protein__YP_009508747__Pudu_puda_papillomavirus_1__1747360
Identity
- Accession:
- YP_009508747 ↗
- Protein ID:
- L1_protein
- Kingdom:
- euk
Quality
84.0
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Zurhausenvirales›
Papillomaviridae›
Dyokappapapillomavirus›
Pudu_puda_papillomavirus_1
TaxID: 1747360
Cluster
View cluster (154 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 22-40_54-108_312-339_370-405_443-473
Domain cluster:
rep: L1_capsid_protein__YP_009272579__Bos_taurus_papillomavirus_13__1887213__D32-107_305-401_440-463
Pfam (4)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 89.3 | 3.70e-25 | 43.8% | 17.3% |
| PF00500.25 | Late_protein_L1 | 34.2 | 1.90e-08 | 23.7% | 7.2% |
| PF00500.25 | Late_protein_L1 | 40.4 | 2.40e-10 | 19.5% | 6.2% |
| PF00500.25 | Late_protein_L1 | 43.2 | 3.40e-11 | 17.8% | 5.6% |
D2
medium
residues 150-253
Domain cluster:
rep: L1__YP_009552560__Gammapapillomavirus_sp.__2049444__D159-250
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 179.5 | 1.70e-52 | 100.0% | 20.7% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1dzlA00 | 2.60.175.20 | Mainly Beta › Sandwich › Polyomavirus Vp1; Chain A › Major capsid L1 (late) superfamily, Papillomavirus | 0.98 | 96.0 | 5.95e-01 | 100.0% | 22.9% |
| 2gu9A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.55 | 32.0 | 3.24e-01 | 100.0% | 55.3% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2806413 | 10.2.1.4 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Late_protein_L1 | 0.99 | 96.0 | 5.87e-01 | 100.0% | 21.6% |
| 2707156 | 10.2.1.4 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Late_protein_L1 | 0.98 | 96.0 | 5.89e-01 | 100.0% | 21.5% |
| 3266725 | 10.12.1.51 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_2 | 0.54 | 40.0 | 3.24e-01 | 100.0% | 39.0% |