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L1_protein
Euk-VirCervus_elaphus_papillomavirus_2
L1_protein__YP_009508777__Cervus_elaphus_papillomavirus_2__1747359
Identity
- Accession:
- YP_009508777 ↗
- Protein ID:
- L1_protein
- Kingdom:
- euk
Quality
81.9
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Zurhausenvirales›
Papillomaviridae›
Xipapillomavirus›
Cervus_elaphus_papillomavirus_2
TaxID: 1747359
Cluster
View cluster (154 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 17-67_375-416_452-483
Domain cluster:
rep: unnamed_protein_product__YP_004895386__Canis_familiaris_papillomavirus_10__1087109__D20-62_366-406_443-470
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 72.0 | 6.30e-20 | 41.6% | 10.5% |
| PF00500.25 | Late_protein_L1 | 54.3 | 1.50e-14 | 36.8% | 8.6% |
| PF00500.25 | Late_protein_L1 | 36.1 | 5.10e-09 | 26.4% | 6.2% |
D2
medium
residues 68-112_151-171_184-257_309-348
Domain cluster:
rep: late_protein_L1__NP_077122__Alphapapillomavirus_4__337043__D129-185_198-277_298-367
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 153.7 | 1.10e-44 | 55.0% | 21.5% |
| PF00500.25 | Late_protein_L1 | 67.3 | 1.70e-18 | 25.6% | 9.0% |
| PF00500.25 | Late_protein_L1 | 70.2 | 2.20e-19 | 22.2% | 8.1% |
D3
medium
residues 113-150_258-308_349-374
Domain cluster:
rep: L1__YP_009345082__Eidolon_helvum_papillomavirus_2__1335476__D106-161_251-269_292-310