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L1_protein
Euk-VirErethizon_dorsatum_papillomavirus_2
L1_protein__YP_009552053__Erethizon_dorsatum_papillomavirus_2__2268125
Identity
- Accession:
- YP_009552053 ↗
- Protein ID:
- L1_protein
- Kingdom:
- euk
Quality
83.0
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Zurhausenvirales›
Papillomaviridae›
Erethizon_dorsatum_papillomavirus_2
TaxID: 2268125
Cluster
View cluster (154 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 146-266_287-298
Domain cluster:
rep: late_protein_L1__NP_077122__Alphapapillomavirus_4__337043__D129-185_198-277_298-367
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 194.1 | 6.40e-57 | 97.0% | 24.8% |
D2
medium
residues 29-89
Domain cluster:
rep: major_capsid_protein__YP_006393294__Human_papillomavirus_136__1070409__D12-70
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 92.2 | 4.70e-26 | 100.0% | 12.1% |
D3
medium
residues 90-145_304-351_375-387
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 59.3 | 4.60e-16 | 48.7% | 10.1% |
| PF00500.25 | Late_protein_L1 | 81.9 | 6.50e-23 | 47.9% | 9.0% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1dzlA00 | 2.60.175.20 | Mainly Beta › Sandwich › Polyomavirus Vp1; Chain A › Major capsid L1 (late) superfamily, Papillomavirus | 0.97 | 94.0 | 5.99e-01 | 100.0% | 64.8% |
| 3s7vC00 | 2.60.175.10 | Mainly Beta › Sandwich › Polyomavirus Vp1; Chain A › Capsid protein VP1,Polyomavirus | 0.51 | 47.0 | 3.58e-01 | 100.0% | 95.5% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2806413 | 10.2.1.4 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Late_protein_L1 | 0.96 | 94.0 | 5.92e-01 | 100.0% | 63.4% |
| 2707156 | 10.2.1.4 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Late_protein_L1 | 0.96 | 93.0 | 5.87e-01 | 100.0% | 61.1% |