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L1_protein
Euk-VirRodent_papillomavirus
L1_protein__YP_009552135__Rodent_papillomavirus__2050020
Identity
- Accession:
- YP_009552135 ↗
- Protein ID:
- L1_protein
- Kingdom:
- euk
Quality
83.3
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Zurhausenvirales›
Papillomaviridae›
Rodent_papillomavirus
TaxID: 2050020
Cluster
View cluster (154 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 25-133_149-165_232-262_308-413_448-476
Domain cluster:
rep: L2__YP_009182328__Rattus_norvegicus_papillomavirus_3__1756445__D22-110_148-252_300-402
Pfam (4)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 191.9 | 3.00e-56 | 43.5% | 28.6% |
| PF00500.25 | Late_protein_L1 | 169.1 | 2.30e-49 | 37.7% | 21.3% |
| PF00500.25 | Late_protein_L1 | 34.8 | 1.20e-08 | 11.6% | 6.4% |
| PF00500.25 | Late_protein_L1 | 37.4 | 1.90e-09 | 10.6% | 5.6% |
D2
medium
residues 134-148_166-231_288-307
Domain cluster:
rep: L1__YP_009552560__Gammapapillomavirus_sp.__2049444__D159-250
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 103.9 | 1.40e-29 | 74.3% | 13.7% |