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L2
Euk-VirCamelus_dromedarius_papillomavirus_2
L2__YP_004306477__Camelus_dromedarius_papillomavirus_2__996651
Identity
- Accession:
- YP_004306477 ↗
- Protein ID:
- L2
- Kingdom:
- euk
Quality
56.5
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Zurhausenvirales›
Papillomaviridae›
Deltapapillomavirus›
Camelus_dromedarius_papillomavirus_2
TaxID: 996651
Cluster
View cluster (133 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 258-353
Domain cluster:
rep: L2_gene_product__YP_006202694__Papio_hamadryas_papillomavirus_1__990303__D242-339
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00513.24 best | Late_protein_L2 | 66.5 | 3.50e-18 | 100.0% | 18.5% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1uebA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 35.0 | 4.15e-01 | 90.6% | 88.9% |
| 8aa9A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.59 | 32.0 | 3.07e-01 | 99.0% | 45.6% |
| 2be3B01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.58 | 41.0 | 3.69e-01 | 100.0% | 53.3% |
| 7ztbB01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.57 | 41.0 | 3.46e-01 | 100.0% | 44.2% |
| 3t1oA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 37.0 | 3.02e-01 | 100.0% | 34.9% |
| 3m9qA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 35.0 | 3.89e-01 | 90.6% | 88.9% |
| 6dnzA02 | 2.70.160.11 | Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 | 0.53 | 47.0 | 3.87e-01 | 99.0% | 80.9% |
| 3zqsA01 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.52 | 36.0 | 3.75e-01 | 90.6% | 78.4% |
| 4lduA03 | 2.30.30.1040 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 34.0 | 3.80e-01 | 86.5% | 92.6% |
| 3vhxF00 | 2.60.40.4330 | Mainly Beta › Sandwich › Immunoglobulin-like › Kinesin-like protein Kif23, Arf6-interacting domain | 0.51 | 35.0 | 3.45e-01 | 92.7% | 65.7% |
| 5dstA02 | 2.70.160.11 | Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 | 0.51 | 44.0 | 3.69e-01 | 99.0% | 80.8% |
| 4hoiB00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.50 | 38.0 | 3.68e-01 | 83.3% | 96.5% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5076488 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.64 | 35.0 | 3.45e-01 | 99.0% | 51.0% |
| 5047636 | 2.1.1.111 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ssb-like_OB | 0.62 | 33.0 | 3.21e-01 | 100.0% | 45.5% |
| 4345080 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.62 | 37.0 | 4.24e-01 | 92.7% | 86.2% |
| 1269295 | 5.1.2.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_43 | 0.61 | 43.0 | 3.00e-01 | 74.0% | 31.9% |
| 3193911 | 389.1.3.0 ↗ | few secondary structure elements › EGF-like › EGF-related › TNF receptor-like | 0.61 | 33.0 | 3.56e-01 | 100.0% | 60.0% |
| 3220263 | 2496.1.1.12 ↗ | a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › PHA-1 | 0.61 | 34.0 | 2.99e-01 | 100.0% | 34.7% |
| 4985272 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.60 | 32.0 | 3.14e-01 | 99.0% | 46.7% |
| 4931879 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.59 | 31.0 | 3.13e-01 | 99.0% | 49.0% |
| 4974920 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.59 | 31.0 | 3.10e-01 | 99.0% | 49.0% |
| 3933099 | 330.2.1.0 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) | 0.58 | 37.0 | 3.92e-01 | 87.5% | 71.8% |
| 4975879 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.58 | 31.0 | 3.01e-01 | 99.0% | 45.5% |
| 4982872 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.58 | 31.0 | 3.01e-01 | 99.0% | 45.5% |
| 5020457 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.57 | 31.0 | 2.98e-01 | 99.0% | 45.5% |
| 3178843 | 211.1.1.6 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase_3 | 0.57 | 43.0 | 3.55e-01 | 100.0% | 44.0% |
| 3687369 | 4.1.1.225 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7025 | 0.54 | 38.0 | 3.84e-01 | 93.8% | 72.0% |
| 3707121 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 37.0 | 4.03e-01 | 90.6% | 92.0% |
| 3594372 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.52 | 41.0 | 2.53e-01 | 84.4% | 29.1% |