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L2

Euk-Vir

Pygoscelis_adeliae_papillomavirus_1

L2__YP_009022076__Pygoscelis_adeliae_papillomavirus_1__1480065

Identity

Accession:
YP_009022076 ↗
Protein ID:
L2
Kingdom:
euk

Quality

47.3 mean pLDDT

Taxonomy

Shotokuvirae› Cossaviricota› Papovaviricetes› Zurhausenvirales› Papillomaviridae› Treisepsilonpapillomavirus› Pygoscelis_adeliae_papillomavirus_1

TaxID: 1480065

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 302-379
PDB
Domain cluster: rep: L2__YP_009551920__Serinus_canaria_papillomavirus_1__2094713__D303-376
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gs3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.73 41.0 3.97e-01 75.6% 48.9%
5odnC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.72 41.0 3.77e-01 75.6% 43.1%
2cwaA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.71 41.0 3.70e-01 75.6% 41.3%
2k5vA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.70 41.0 3.81e-01 71.8% 45.9%
1se8A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.70 46.0 4.03e-01 75.6% 46.8%
3ulpD00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.70 45.0 4.00e-01 75.6% 46.0%
8aa9A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 40.0 3.56e-01 70.5% 39.5%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 43.0 3.82e-01 75.6% 47.3%
5aj3Q00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 39.0 3.48e-01 76.9% 41.3%
4n6tA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 49.0 4.92e-01 94.9% 81.0%
3fhwA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 41.0 3.78e-01 75.6% 50.5%
2o3oA01 2.40.128.690 Mainly Beta › Beta Barrel › Lipocalin › YycH protein, domain 3-like 0.63 57.0 4.88e-01 100.0% 70.2%
3ub1A01 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 52.0 4.39e-01 93.6% 77.9%
1wnhA01 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 52.0 4.83e-01 94.9% 73.0%
1ut7B01 2.170.150.80 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › NAC domain 0.62 45.0 3.80e-01 75.6% 65.6%
2nlkA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.61 46.0 3.21e-01 80.8% 31.9%
5bkaE01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 53.0 4.52e-01 100.0% 86.4%
2w4yA00 2.40.160.220 Mainly Beta › Beta Barrel › Porin › 0.61 36.0 3.17e-01 89.7% 37.7%
2ebkA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.60 35.0 3.03e-01 93.6% 35.2%
1olzA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 53.0 3.28e-01 100.0% 28.4%
3en2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 37.0 3.59e-01 75.6% 53.8%
2vf9A00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.60 37.0 3.13e-01 96.2% 36.6%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 45.0 4.72e-01 96.2% 88.9%
1vclA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.59 46.0 3.77e-01 84.6% 95.3%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 40.0 4.21e-01 91.0% 79.7%
3gzrB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 50.0 4.19e-01 100.0% 78.7%
4l8hB00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.57 37.0 3.19e-01 93.6% 41.5%
1zj8A04 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.56 44.0 3.75e-01 91.0% 91.9%
3k8aB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 37.0 3.45e-01 71.8% 51.5%
5b4wA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 49.0 3.06e-01 100.0% 32.9%
2imjD01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 47.0 3.94e-01 100.0% 69.7%
2akjA03 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.54 45.0 3.91e-01 93.6% 76.0%
3cygA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.54 47.0 4.15e-01 100.0% 95.0%
3oloA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 34.0 3.05e-01 73.1% 44.1%
2w5nA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.54 46.0 3.06e-01 100.0% 42.2%
1b9vA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.53 45.0 2.97e-01 100.0% 23.3%
3bf2A00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.53 41.0 3.63e-01 88.5% 77.6%
3racA00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.53 45.0 2.98e-01 97.4% 58.1%
5eo6B00 3.40.1500.10 Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › Coproporphyrinogen III oxidase, aerobic 0.52 41.0 2.86e-01 89.7% 87.3%
3butA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 45.0 3.88e-01 97.4% 87.2%
3luqB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 37.0 3.37e-01 78.2% 90.4%
4gzvA00 2.40.128.490 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14869 family, DUF4488 0.51 44.0 3.75e-01 100.0% 87.8%
1uzxA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.51 37.0 3.20e-01 100.0% 45.0%
3zi1A02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.50 37.0 3.04e-01 78.2% 73.1%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4084495 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.86 52.0 4.63e-01 75.6% 45.7%
3639738 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.84 51.0 5.52e-01 75.6% 71.6%
3365669 2.1.1.229 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30940 0.77 46.0 4.04e-01 75.6% 42.7%
3924081 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.77 52.0 4.18e-01 75.6% 38.6%
4296288 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.75 45.0 4.07e-01 75.6% 44.8%
3616890 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.75 46.0 4.03e-01 75.6% 42.6%
3783432 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.75 46.0 4.19e-01 75.6% 46.7%
4170378 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.72 46.0 4.03e-01 75.6% 44.3%
4025160 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.69 45.0 3.85e-01 75.6% 42.4%
3683658 2484.1.1.157 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 0.66 43.0 2.80e-01 74.4% 14.4%
317 2.1.1.122 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 0.66 43.0 3.82e-01 75.6% 47.3%
3190995 4.8.1.22 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.66 55.0 4.22e-01 98.7% 40.6%
3687369 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.65 55.0 5.04e-01 98.7% 71.0%
4012953 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.65 55.0 4.40e-01 98.7% 47.3%
3663874 2484.1.1.157 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 0.65 42.0 2.69e-01 74.4% 12.9%
3653384 708.1.1.1 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.65 47.0 3.73e-01 75.6% 58.1%
4626934 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 41.0 3.74e-01 71.8% 46.7%
3466996 243.3.1.19 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.65 51.0 4.48e-01 92.3% 56.7%
4122961 2.1.1.122 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 0.64 41.0 3.80e-01 75.6% 51.0%
4068016 2.1.1.122 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 0.64 41.0 3.72e-01 75.6% 48.6%
3658408 4325.1.1.13 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF4371 0.64 41.0 4.19e-01 73.1% 68.0%
3641990 295.1.1.39 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF4371 0.62 41.0 4.18e-01 75.6% 70.7%
3676745 2484.1.1.157 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 0.62 43.0 3.63e-01 75.6% 41.4%
3811894 2484.1.1.198 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT, DUF4371 0.61 43.0 2.76e-01 75.6% 14.1%
4508852 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.61 51.0 4.51e-01 93.6% 76.5%
4264144 2.1.1.122 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 0.59 39.0 3.60e-01 74.4% 50.5%
3412126 243.3.1.53 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › CHGN 0.59 48.0 4.53e-01 93.6% 73.0%
1555393 2.1.1.4 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 0.59 35.0 3.05e-01 91.0% 35.4%
3817752 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.58 44.0 4.59e-01 88.5% 94.3%
222748 2.1.1.122 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 0.57 38.0 3.68e-01 71.8% 58.9%
1555740 5.1.12.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › PERK and Ire1 luminal domains 0.57 41.0 2.91e-01 75.6% 50.6%
5052460 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.57 51.0 3.29e-01 100.0% 37.3%
3695702 5.1.2.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_32N 0.56 50.0 3.18e-01 98.7% 26.4%
381191 2.1.1.122 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 0.56 37.0 3.45e-01 71.8% 51.5%
3625971 216.1.1.3 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.56 45.0 3.72e-01 100.0% 48.3%
4327241 2.1.1.122 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 0.55 37.0 3.44e-01 71.8% 54.1%
4997159 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.54 38.0 3.10e-01 73.1% 73.1%
3490141 216.1.1.3 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.54 43.0 3.60e-01 98.7% 48.3%
4960088 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.54 39.0 3.37e-01 75.6% 91.7%
4175269 225.1.1.0 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.53 43.0 2.69e-01 89.7% 62.7%
3892129 216.1.1.3 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.52 42.0 3.54e-01 98.7% 50.0%
3966915 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.52 38.0 2.58e-01 76.9% 41.6%
1566324 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.52 40.0 3.11e-01 84.6% 53.6%
3527281 223.2.1.4 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › DENN,uDENN 0.52 45.0 3.48e-01 100.0% 94.6%
3536617 223.1.1.29 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_11 0.52 43.0 3.74e-01 97.4% 61.5%
4682251 2007.1.3.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.51 35.0 2.30e-01 71.8% 93.1%
3290046 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.51 37.0 3.11e-01 76.9% 84.6%
3647962 216.1.1.3 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.50 41.0 3.46e-01 93.6% 50.3%
5046747 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.50 40.0 2.65e-01 88.5% 99.7%