←Back to structures
LC064302.1__BAR94624.1__X__00065
Bact-VirLC064302.1__BAR94624.1__X__00065
Identity
- Accession:
- LC064302 ↗
- Kingdom:
- phage
Quality
83.9
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Schitoviridae›
Luzseptimavirus›
Pseudomonas_phage_KPP21
TaxID: 1678082
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-63
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1s7zA01 | 1.20.120.780 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DNA mimic ocr | 0.68 | 56.0 | 4.87e-01 | 98.3% | 96.0% |
| 1cf7B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 54.0 | 4.94e-01 | 93.3% | 74.4% |
| 1eucB01 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.66 | 58.0 | 4.34e-01 | 100.0% | 56.1% |
| 2k85A00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.65 | 55.0 | 5.42e-01 | 100.0% | 92.3% |
| 3h36A00 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.61 | 50.0 | 4.72e-01 | 100.0% | 96.2% |
| 4hr1A00 | 1.20.1270.410 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.60 | 44.0 | 3.61e-01 | 80.0% | 82.2% |
| 4u04A02 | 1.10.3290.10 | Mainly Alpha › Orthogonal Bundle › Fic-like fold › Fido-like domain | 0.60 | 49.0 | 3.46e-01 | 100.0% | 68.1% |
| 2fd5A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.59 | 47.0 | 3.87e-01 | 98.3% | 61.4% |
| 3ilkA02 | 1.10.8.590 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.58 | 39.0 | 3.83e-01 | 71.7% | 61.8% |
| 2nrlA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.58 | 52.0 | 3.87e-01 | 100.0% | 48.3% |
| 3hmfA00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.57 | 43.0 | 3.65e-01 | 86.7% | 70.7% |
| 2aq6A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.57 | 43.0 | 3.36e-01 | 83.3% | 66.4% |
| 1t6jA03 | 1.10.274.20 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 | 0.56 | 46.0 | 4.02e-01 | 100.0% | 76.7% |
| 1xjuA00 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.56 | 42.0 | 3.27e-01 | 88.3% | 84.6% |
| 2i6hA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.55 | 36.0 | 3.14e-01 | 80.0% | 42.7% |
| 3iu5A00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.55 | 42.0 | 3.56e-01 | 88.3% | 72.8% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.55 | 37.0 | 3.41e-01 | 76.7% | 54.5% |
| 3vayA02 | 1.20.120.1600 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.55 | 46.0 | 4.17e-01 | 98.3% | 80.5% |
| 1k32A03 | 3.30.750.44 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.55 | 40.0 | 3.80e-01 | 80.0% | 79.2% |
| 3fnbA01 | 1.20.1440.110 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase | 0.54 | 40.0 | 3.45e-01 | 88.3% | 58.8% |
| 1werA02 | 1.10.506.10 | Mainly Alpha › Orthogonal Bundle › GTPase Activation - p120GAP; domain 1 › GTPase Activation - p120gap; domain 1 | 0.53 | 48.0 | 3.53e-01 | 98.3% | 39.9% |
| 2guzB00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.53 | 45.0 | 4.41e-01 | 95.0% | 93.8% |
| 5yjlB01 | 3.30.460.30 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Glutamyl-tRNA reductase, N-terminal domain | 0.53 | 44.0 | 3.39e-01 | 100.0% | 82.0% |
| 2yevA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.53 | 36.0 | 3.39e-01 | 75.0% | 58.1% |
| 2guzA00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.53 | 46.0 | 4.37e-01 | 100.0% | 87.3% |
| 3kheA01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.52 | 40.0 | 3.49e-01 | 91.7% | 82.2% |
| 4iu9B01 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.52 | 43.0 | 3.05e-01 | 100.0% | 32.6% |
| 2jo7A00 | 1.10.4170.10 | Mainly Alpha › Orthogonal Bundle › Glycosylphosphatidylinositol-anchored merozoite surface protein › Glycosylphosphatidylinositol-anchored merozoite surface protein | 0.51 | 39.0 | 2.81e-01 | 90.0% | 67.9% |
| 4fppA02 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.50 | 38.0 | 3.06e-01 | 86.7% | 70.8% |
| 3pe0A02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.50 | 42.0 | 3.51e-01 | 91.7% | 78.3% |
| 7zxkC01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.50 | 39.0 | 3.04e-01 | 90.0% | 94.7% |
| 3i2fA02 | 1.10.3020.10 | Mainly Alpha › Orthogonal Bundle › alpha-amino acid ester hydrolase ( Helical cap domain) › alpha-amino acid ester hydrolase ( Helical cap domain) | 0.50 | 37.0 | 3.31e-01 | 83.3% | 100.0% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4928310 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.68 | 57.0 | 5.04e-01 | 98.3% | 81.7% |
| 5003639 | 2.21.1.0 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) | 0.66 | 54.0 | 4.09e-01 | 100.0% | 36.8% |
| 3930465 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 55.0 | 4.67e-01 | 98.3% | 57.1% |
| 5039997 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.64 | 54.0 | 4.76e-01 | 100.0% | 74.7% |
| 4938118 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.63 | 52.0 | 4.66e-01 | 100.0% | 78.9% |
| 4940179 | 2.21.1.3 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 | 0.61 | 52.0 | 3.87e-01 | 98.3% | 45.0% |
| 3213226 | 3075.1.1.0 ↗ | a+b two layers › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA | 0.59 | 48.0 | 4.73e-01 | 95.0% | 84.6% |
| 3801665 | 4040.1.1.1 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like › Fic | 0.58 | 44.0 | 3.75e-01 | 85.0% | 47.3% |
| 3574087 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.58 | 42.0 | 3.58e-01 | 76.7% | 74.7% |
| 3451551 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.58 | 47.0 | 4.43e-01 | 93.3% | 74.7% |
| 4191800 | 3075.1.1.0 ↗ | a+b two layers › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA | 0.57 | 43.0 | 4.50e-01 | 88.3% | 92.7% |
| 3281755 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.57 | 36.0 | 3.66e-01 | 71.7% | 65.0% |
| 3577145 | 4030.1.1.0 ↗ | alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz | 0.56 | 42.0 | 4.36e-01 | 100.0% | 90.9% |
| None | — | 0.56 | 45.0 | 2.91e-01 | 90.0% | 18.7% | |
| 4979920 | 2007.1.14.7 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › HGD-D | 0.55 | 42.0 | 2.91e-01 | 86.7% | 68.2% |
| 4273057 | 102.8.1.1 ↗ | alpha arrays › HhH/H2TH › UPF0348 protein MJ0951 C-terminal domain › UPF0348 protein MJ0951 C-terminal domain › HIGH_NTase1 | 0.55 | 41.0 | 3.91e-01 | 95.0% | 68.0% |
| 4134358 | 102.8.1.1 ↗ | alpha arrays › HhH/H2TH › UPF0348 protein MJ0951 C-terminal domain › UPF0348 protein MJ0951 C-terminal domain › HIGH_NTase1 | 0.55 | 41.0 | 3.26e-01 | 95.0% | 36.4% |
| 4222754 | 304.41.1.1 ↗ | a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N | 0.54 | 46.0 | 3.55e-01 | 100.0% | 84.7% |
| 3168797 | 5001.1.1.190 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › NPR3 | 0.54 | 45.0 | 3.94e-01 | 100.0% | 61.6% |
| 3283355 | 150.5.1.51 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › WXG100_2 | 0.53 | 37.0 | 3.33e-01 | 73.3% | 56.5% |
| 3977695 | 3711.1.1.1 ↗ | alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ | 0.53 | 37.0 | 3.12e-01 | 76.7% | 73.3% |
| 3473142 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.53 | 45.0 | 3.48e-01 | 96.7% | 67.1% |
| 4990303 | 304.41.1.1 ↗ | a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N | 0.53 | 44.0 | 3.45e-01 | 100.0% | 78.6% |
| 4476425 | 304.41.1.1 ↗ | a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N | 0.53 | 45.0 | 3.46e-01 | 100.0% | 42.1% |
| 3398805 | 3826.1.1.0 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) | 0.52 | 43.0 | 4.06e-01 | 100.0% | 78.8% |
| 4448178 | 304.41.1.1 ↗ | a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N | 0.52 | 44.0 | 3.38e-01 | 96.7% | 93.8% |
| 4054217 | 102.8.1.1 ↗ | alpha arrays › HhH/H2TH › UPF0348 protein MJ0951 C-terminal domain › UPF0348 protein MJ0951 C-terminal domain › HIGH_NTase1 | 0.52 | 43.0 | 2.77e-01 | 100.0% | 19.7% |
| 4438123 | 6155.1.1.8 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › Pyr4-TMTC | 0.52 | 38.0 | 3.13e-01 | 85.0% | 59.2% |
| 4402544 | 304.41.1.1 ↗ | a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N | 0.52 | 45.0 | 3.50e-01 | 100.0% | 45.9% |
| 3388493 | 633.10.1.15 ↗ | alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like › Transmemb_17 | 0.52 | 42.0 | 3.29e-01 | 90.0% | 83.1% |
| 3785654 | 5.1.4.37 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 | 0.52 | 41.0 | 2.39e-01 | 86.7% | 86.9% |
| 4677488 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.51 | 43.0 | 3.11e-01 | 96.7% | 68.4% |
| 3286501 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 42.0 | 3.30e-01 | 98.3% | 80.7% |
| 3482907 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.51 | 45.0 | 3.63e-01 | 100.0% | 85.2% |