←Back to structures

LC121084.1__BAU39971.1__X__00013

Bact-Vir

LC121084.1__BAU39971.1__X__00013

Identity

Accession:
LC121084 ↗
Kingdom:
phage

Quality

72.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Ackermannviridae› Ralstonia_phage_RSP15

TaxID: 1785960

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-52
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1w8iA00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.92 66.0 4.42e-01 75.0% 23.4%
3vdpA01 1.10.8.420 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecR Domain 1 0.81 57.0 5.59e-01 83.3% 69.2%
3keyA01 1.10.10.1080 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain 0.81 65.0 5.34e-01 89.6% 49.4%
4v19K02 1.10.10.250 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L11/L12, C-terminal domain 0.80 60.0 5.14e-01 81.2% 53.3%
5mmiJ02 1.10.10.250 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L11/L12, C-terminal domain 0.79 56.0 4.93e-01 81.2% 52.2%
2h8pC00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.79 57.0 5.39e-01 77.1% 70.2%
1tafB00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.77 68.0 6.02e-01 100.0% 78.6%
3p5pA03 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.76 67.0 4.04e-01 97.9% 18.7%
3ermB00 1.10.10.710 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PSPTO_1197 like 0.76 56.0 5.07e-01 79.2% 67.2%
3nymA00 6.10.290.10 Special › Helix non-globular › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.73 51.0 3.75e-01 79.2% 28.2%
1cukA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.72 49.0 4.28e-01 87.5% 44.7%
3nbxX03 1.20.58.1510 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.72 55.0 4.24e-01 81.2% 38.6%
2w43A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.71 53.0 5.09e-01 83.3% 73.7%
1qsaA03 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.71 46.0 3.11e-01 77.1% 18.5%
2wg7A00 1.20.90.10 Mainly Alpha › Up-down Bundle › Phospholipase A2 › Phospholipase A2 domain 0.70 55.0 4.07e-01 87.5% 33.9%
1x42A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.70 54.0 4.68e-01 100.0% 53.0%
1dp3A00 1.10.10.450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › TraM protein, DNA-binding 0.67 46.0 4.50e-01 85.4% 65.5%
4e6nA02 6.10.140.1010 Special › Helix non-globular › Helix Hairpins › 0.67 55.0 4.90e-01 93.8% 65.2%
3ezuA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.66 57.0 3.76e-01 93.8% 50.0%
3bh0A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.66 54.0 3.28e-01 89.6% 52.5%
1ks9A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.62 47.0 3.63e-01 89.6% 35.8%
3thxB02 3.30.420.110 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › MutS, connector domain 0.61 46.0 3.26e-01 83.3% 27.0%
2ayaA00 3.30.300.150 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › DNA polymerase III, tau subunit, domain V 0.54 42.0 3.33e-01 100.0% 81.2%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
9937 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.92 66.0 4.41e-01 75.0% 23.2%
4959424 103.6.1.0 ↗ alpha arrays › RuvA-C › FGAM synthase PurL, linker domain › FGAM synthase PurL, linker domain 0.85 65.0 6.25e-01 100.0% 72.7%
3964989 589.1.1.2 ↗ alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › Porin chaperone SurA, peptide-binding domain › SurA_N_3 0.81 70.0 4.95e-01 100.0% 32.0%
3764818 4120.1.1.68 ↗ few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › TMEM65 0.79 69.0 5.19e-01 97.9% 41.7%
3184238 146.1.1.1 ↗ alpha arrays › Di-copper centre-containing domain › Di-copper centre-containing domain › Di-copper centre-containing domain › Tyrosinase 0.77 59.0 3.44e-01 83.3% 9.8%
3202292 101.38.1.3 ↗ alpha arrays › HTH › DNA-binding domain of the replication initiator protein ColE2-Rep › DNA-binding domain of the replication initiator protein ColE2-Rep › DUF6891 0.74 60.0 5.37e-01 100.0% 62.9%
3384684 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 58.0 4.78e-01 85.4% 48.2%
4975796 4953.1.1.0 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.72 62.0 4.94e-01 95.8% 49.5%
3249028 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.71 49.0 4.70e-01 72.9% 67.3%
4663861 5069.1.3.78 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › MIS13 0.71 60.0 4.96e-01 97.9% 55.0%
3433039 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.70 52.0 4.19e-01 83.3% 46.0%
3728444 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.70 59.0 4.69e-01 100.0% 62.9%
4026795 3871.1.1.1 ↗ alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.69 61.0 4.37e-01 100.0% 92.1%
4996734 3352.1.1.2 ↗ alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › PMT_2 0.68 58.0 3.49e-01 100.0% 19.4%
3838463 604.17.1.0 ↗ alpha bundles › Spectrin repeat-like › MTH_863 C-terminal domain-like › MTH_863 C-terminal domain-like 0.65 42.0 4.21e-01 81.2% 64.0%
4020548 7579.1.1.58 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DUF829 0.64 49.0 3.15e-01 95.8% 15.6%
4007801 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.60 55.0 3.45e-01 100.0% 39.6%