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LC121084.1__BAU40036.1__X__00078

Bact-Vir

LC121084.1__BAU40036.1__X__00078

Identity

Accession:
LC121084 ↗
Kingdom:
phage

Quality

60.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Ackermannviridae› Ralstonia_phage_RSP15

TaxID: 1785960

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 594-675
PDB
Domain cluster: rep: MW073017.1__QPB08539.1__X__00060__D1038-1127
D2 medium residues 519-579
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1hyrC01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.70 60.0 4.29e-01 95.1% 74.4%
3blzA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.70 54.0 4.26e-01 83.6% 44.4%
7zqiA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.68 58.0 4.18e-01 95.1% 74.7%
1kcgC00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.68 56.0 4.10e-01 93.4% 73.5%
2o5nA02 3.30.500.30 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.66 56.0 4.17e-01 93.4% 71.3%
3jvgA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.66 55.0 4.04e-01 95.1% 73.4%
1a6zA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.66 56.0 4.01e-01 95.1% 74.3%
4hwmA00 2.40.128.500 Mainly Beta › Beta Barrel › Lipocalin › YedD-like protein 0.64 44.0 3.55e-01 70.5% 53.0%
4hz9B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 47.0 3.77e-01 82.0% 39.0%
4g59C02 3.30.500.30 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.64 54.0 4.03e-01 95.1% 72.2%
1pqzA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.64 43.0 3.37e-01 70.5% 35.8%
2yzyA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.63 56.0 4.13e-01 100.0% 87.7%
2glxA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.63 52.0 3.62e-01 93.4% 32.7%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.62 52.0 4.09e-01 98.4% 74.8%
3k7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 45.0 3.75e-01 91.8% 44.4%
2h36X00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 45.0 3.75e-01 82.0% 45.4%
3b8bA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.61 54.0 3.96e-01 100.0% 57.2%
2gu3A01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 43.0 4.22e-01 80.3% 72.3%
3g8yA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.59 49.0 3.05e-01 95.1% 78.8%
4h0pA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.59 46.0 3.22e-01 88.5% 26.0%
2lexA00 2.20.25.80 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain 0.58 42.0 4.18e-01 82.0% 76.2%
2arhA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 47.0 3.56e-01 95.1% 88.0%
3lygA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 43.0 3.54e-01 83.6% 43.3%
2xglA00 3.10.450.300 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › YebF/Colicin-M immunity protein 0.57 41.0 3.67e-01 77.0% 53.8%
3nqzA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 43.0 3.95e-01 83.6% 66.7%
2lmeA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.54 43.0 3.69e-01 90.2% 58.1%
4pj2A00 2.40.128.460 Mainly Beta › Beta Barrel › Lipocalin › Periplasmic lysozyme inhibitor of I-type lysozyme 0.54 41.0 3.38e-01 86.9% 78.5%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.53 41.0 3.25e-01 86.9% 50.7%
1tltA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.53 42.0 3.13e-01 93.4% 32.8%
7xpkA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.51 39.0 3.05e-01 86.9% 91.0%
3u2gA02 2.60.98.40 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › DU1608 C-terminal domain 0.50 43.0 3.48e-01 100.0% 47.3%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3227619 6129.1.1.1 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.72 64.0 4.54e-01 100.0% 42.2%
3916473 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.67 61.0 5.14e-01 100.0% 91.0%
3521727 233.1.1.1 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.67 56.0 3.98e-01 93.4% 71.9%
4940923 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.66 51.0 4.70e-01 83.6% 76.2%
327605 233.1.1.8 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › M157_N_1 0.66 56.0 4.06e-01 95.1% 65.1%
4338928 233.1.1.6 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I_3 0.66 46.0 4.10e-01 78.7% 51.1%
3998439 243.6.1.4 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA 0.65 54.0 4.65e-01 91.8% 83.2%
3973036 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.65 53.0 3.82e-01 93.4% 32.4%
3394354 243.6.1.4 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA 0.65 53.0 4.56e-01 91.8% 85.0%
3480412 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.64 53.0 4.66e-01 91.8% 91.1%
3511988 243.6.1.4 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA 0.64 53.0 4.65e-01 91.8% 93.3%
3217309 243.6.1.4 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA 0.64 52.0 4.61e-01 91.8% 92.2%
142797 233.1.1.6 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I_3 0.63 52.0 3.80e-01 95.1% 74.7%
3793738 220.1.1.32 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Sec3-PIP2_bind 0.62 48.0 3.67e-01 83.6% 53.8%
3429972 708.1.1.8 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FAR1 0.62 47.0 4.08e-01 82.0% 77.9%
3967070 809.1.1.8 ↗ a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › DUF2845 0.61 44.0 4.27e-01 77.0% 71.4%
4545659 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.61 46.0 4.35e-01 82.0% 72.0%
3927330 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.61 50.0 4.50e-01 91.8% 94.1%
3789082 4291.1.1.1 ↗ beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.61 49.0 3.06e-01 95.1% 19.8%
3213694 243.1.1.75 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26530 0.60 47.0 3.82e-01 85.2% 47.8%
3439556 708.1.1.8 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FAR1 0.59 45.0 3.75e-01 82.0% 66.7%
3990074 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.59 49.0 4.17e-01 95.1% 90.5%
154280 2484.1.1.12 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Acetate_kinase 0.59 46.0 3.21e-01 88.5% 25.6%
4165617 865.1.1.0 ↗ beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain 0.59 52.0 4.08e-01 98.4% 87.2%
4119667 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.58 45.0 4.11e-01 86.9% 65.9%
3628522 5.1.4.489 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Prenyltrans 0.58 45.0 2.53e-01 86.9% 37.8%
3574500 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 44.0 2.66e-01 86.9% 63.5%
3362014 708.1.1.8 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FAR1 0.58 44.0 3.77e-01 83.6% 70.0%
4988043 5.1.4.13 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP 0.56 47.0 2.97e-01 95.1% 52.6%
165654 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.50 35.0 3.32e-01 73.8% 68.9%