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LC121084.1__BAU40041.1__X__00083

Bact-Vir

LC121084.1__BAU40041.1__X__00083

Identity

Accession:
LC121084 ↗
Kingdom:
phage

Quality

78.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Ackermannviridae› Ralstonia_phage_RSP15

TaxID: 1785960

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 96-165
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3um7B01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.74 43.0 3.83e-01 94.3% 41.2%
2j9wB00 1.20.120.1130 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vps28 C-terminal domain 0.60 41.0 3.73e-01 71.4% 75.8%
6jpaA01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.59 45.0 3.59e-01 82.9% 88.3%
2n98A00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.51 34.0 3.16e-01 70.0% 61.1%
1owxA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.51 38.0 3.32e-01 82.9% 92.0%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3704684 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.73 49.0 4.45e-01 70.0% 97.9%
3686196 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.67 50.0 3.29e-01 78.6% 54.3%
3479213 601.28.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like 0.60 41.0 3.70e-01 72.9% 75.7%
3369015 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.60 41.0 2.61e-01 71.4% 66.9%
3394445 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.57 40.0 3.86e-01 74.3% 80.0%
3186937 148.1.1.17 ↗ alpha arrays › Histone-like › Histone-related › Histone › CENP-T_C 0.55 40.0 3.56e-01 78.6% 53.3%
3708902 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.55 48.0 2.87e-01 97.1% 35.7%
D2 medium residues 1-95
PDB
Domain cluster: representative