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LC121084.1__BAU40076.1__X__00118

Bact-Vir

LC121084.1__BAU40076.1__X__00118

Identity

Accession:
LC121084 ↗
Kingdom:
phage

Quality

87.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Ackermannviridae› Ralstonia_phage_RSP15

TaxID: 1785960

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-78
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yuaA02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.64 36.0 4.01e-01 77.3% 70.7%
3kksB00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.63 47.0 3.78e-01 100.0% 40.1%
4d7rA01 1.10.220.20 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › 0.61 38.0 3.70e-01 93.3% 56.1%
3fm2A00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.61 42.0 3.52e-01 100.0% 41.4%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.60 53.0 4.35e-01 100.0% 84.3%
4wsfA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 49.0 4.33e-01 100.0% 63.1%
4qi3A00 2.60.40.1210 Mainly Beta › Sandwich › Immunoglobulin-like › Cellobiose dehydrogenase, cytochrome domain 0.58 51.0 3.75e-01 100.0% 90.3%
7oufB01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.58 46.0 3.76e-01 100.0% 44.3%
2kvtA00 3.30.730.30 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein 0.56 37.0 3.77e-01 85.3% 70.4%
2v95A02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.56 40.0 3.45e-01 88.0% 45.7%
6guuA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 33.0 3.71e-01 100.0% 83.3%
4qucA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 33.0 3.60e-01 100.0% 76.8%
5inwA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.55 40.0 3.64e-01 88.0% 55.6%
8b4hA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.54 43.0 3.47e-01 100.0% 42.0%
1xteA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 38.0 3.43e-01 80.0% 94.8%
1t4lB00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 38.0 3.65e-01 84.0% 64.4%
3ndaA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.53 40.0 3.34e-01 86.7% 46.2%
7vljA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.53 37.0 3.49e-01 88.0% 60.2%
3f02B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.52 41.0 3.78e-01 86.7% 65.0%
1wxrA03 3.30.160.280 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 37.0 3.73e-01 94.7% 73.7%
1g6zA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 32.0 3.33e-01 100.0% 65.7%
2h1eA02 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 34.0 3.75e-01 100.0% 92.7%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 30.0 3.22e-01 94.7% 66.1%
2zbbA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 37.0 3.71e-01 100.0% 75.3%
1vqrD00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.50 44.0 3.06e-01 100.0% 55.6%
6l4lA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.50 42.0 3.60e-01 100.0% 75.7%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.50 32.0 3.24e-01 98.7% 62.7%
1fu1A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.50 38.0 3.37e-01 85.3% 80.5%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5049870 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.73 42.0 4.37e-01 80.0% 60.0%
3620016 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.67 39.0 4.39e-01 100.0% 78.2%
3703176 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.64 33.0 4.07e-01 89.3% 81.8%
3401720 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.62 48.0 4.90e-01 88.0% 84.0%
3985617 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.61 36.0 3.77e-01 96.0% 62.9%
3924385 1.1.15.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.61 54.0 3.57e-01 100.0% 35.7%
4947615 3604.1.1.0 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain 0.60 41.0 4.41e-01 70.7% 92.3%
3842576 220.1.1.67 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › EVH1_PP4R3 0.60 49.0 4.20e-01 100.0% 55.8%
4934950 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 38.0 3.18e-01 100.0% 36.9%
3273880 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.60 46.0 3.62e-01 81.3% 70.0%
4278695 2484.1.1.101 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.58 45.0 4.49e-01 100.0% 82.5%
4167130 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.58 50.0 3.12e-01 98.7% 59.3%
3927894 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.58 43.0 3.65e-01 82.7% 83.7%
3704344 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.58 35.0 3.72e-01 100.0% 69.2%
3395736 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.57 35.0 3.82e-01 100.0% 75.0%
4086202 3604.1.1.1 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.57 39.0 4.14e-01 70.7% 89.2%
4298544 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 42.0 3.59e-01 81.3% 79.2%
3714703 1021.1.1.0 ↗ a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.56 32.0 2.98e-01 96.0% 42.0%
4004358 252.2.1.3 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_1 0.56 34.0 3.90e-01 93.3% 90.0%
3494457 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.55 42.0 3.70e-01 82.7% 77.4%
4369577 3604.1.1.1 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.55 38.0 4.12e-01 70.7% 96.7%
3718300 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 36.0 3.61e-01 92.0% 66.7%
3391894 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.54 33.0 3.45e-01 100.0% 64.3%
3327801 216.1.1.5 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › BRE 0.54 40.0 3.51e-01 81.3% 78.3%
3253903 2008.1.1.59 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.54 46.0 3.25e-01 92.0% 76.8%
4286628 3651.1.1.1 ↗ alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B 0.54 45.0 3.67e-01 97.3% 83.9%
4018649 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.53 33.0 3.38e-01 100.0% 64.3%
4025256 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.53 38.0 3.79e-01 80.0% 72.5%
3721450 3651.1.1.1 ↗ alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B 0.53 45.0 3.67e-01 96.0% 88.0%
3513513 220.1.1.67 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › EVH1_PP4R3 0.53 47.0 4.16e-01 100.0% 72.7%
3922240 3755.3.1.321 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › WHAMM-JMY_N 0.53 38.0 3.40e-01 77.3% 97.3%
3673747 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.53 34.0 3.81e-01 100.0% 90.9%
3473306 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.53 33.0 3.30e-01 100.0% 61.3%
3623534 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 45.0 4.34e-01 100.0% 87.8%
3487913 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.52 32.0 3.16e-01 100.0% 54.1%
3875076 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.52 43.0 3.63e-01 100.0% 53.1%
3768845 4294.1.1.0 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.51 37.0 3.38e-01 77.3% 73.3%
3460551 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.51 33.0 3.44e-01 100.0% 71.4%
3627987 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.51 30.0 3.48e-01 100.0% 95.6%
3478366 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.51 37.0 3.42e-01 80.0% 94.3%
2998571 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.51 44.0 2.95e-01 100.0% 88.4%
3287903 802.1.1.1 ↗ a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 › BFN_dom 0.51 31.0 3.46e-01 97.3% 88.0%
3427966 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.50 31.0 3.40e-01 96.0% 78.3%