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LC121084.1__BAU40109.1__X__00151

Bact-Vir

LC121084.1__BAU40109.1__X__00151

Identity

Accession:
LC121084 ↗
Kingdom:
phage

Quality

82.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Ackermannviridae› Ralstonia_phage_RSP15

TaxID: 1785960

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-71
PDB
Domain cluster: rep: HQ615693.1__AEC53146.1__SCRM01_200__00200__D9-70
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 61.0 5.84e-01 100.0% 79.2%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.70 57.0 5.80e-01 100.0% 88.9%
1n27A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 53.0 4.60e-01 100.0% 54.2%
1jb0E00 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.69 62.0 6.06e-01 100.0% 91.3%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 59.0 5.72e-01 100.0% 83.3%
6vilA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.68 62.0 4.67e-01 100.0% 49.7%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 57.0 4.97e-01 100.0% 63.0%
1whlA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.67 61.0 5.30e-01 100.0% 80.0%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.67 61.0 4.58e-01 100.0% 49.3%
5z8lA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.65 59.0 4.77e-01 100.0% 58.8%
1ixdA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.65 58.0 4.93e-01 100.0% 65.4%
4lduA03 2.30.30.1040 Mainly Beta › Roll › SH3 type barrels. › 0.64 58.0 5.69e-01 100.0% 92.6%
4b6mB00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.64 59.0 5.43e-01 100.0% 84.8%
4tkoB01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.62 47.0 4.23e-01 100.0% 58.7%
1vw4M01 2.30.30.790 Mainly Beta › Roll › SH3 type barrels. › 0.59 51.0 4.06e-01 100.0% 47.0%
1r6zA03 2.170.260.10 Mainly Beta › Beta Complex › paz domain › paz domain 0.59 53.0 4.21e-01 100.0% 62.7%
3otpA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.58 49.0 3.45e-01 93.8% 40.9%
2iw3A05 2.40.50.990 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 49.0 4.20e-01 96.9% 60.6%
1uirA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.58 40.0 4.30e-01 96.9% 92.3%
2cmgA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.58 41.0 4.43e-01 92.2% 94.1%
1inlC02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.58 41.0 4.14e-01 95.3% 76.6%
3o4fC01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.57 40.0 4.30e-01 96.9% 94.1%
1zarA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 39.0 3.64e-01 71.9% 91.4%
2gk6A02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.56 44.0 4.06e-01 100.0% 66.3%
1iy9A02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.56 39.0 4.13e-01 96.9% 92.3%
3lq6A02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.56 42.0 3.51e-01 81.2% 89.5%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.56 42.0 4.02e-01 100.0% 68.4%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.55 42.0 4.39e-01 96.9% 98.2%
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.55 42.0 3.11e-01 100.0% 28.6%
2e5wA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.54 38.0 3.96e-01 96.9% 87.5%
3exzB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 45.0 3.48e-01 93.8% 89.8%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 46.0 3.91e-01 100.0% 80.9%
2o07A01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.53 38.0 3.91e-01 96.9% 84.7%
1boqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 42.0 3.67e-01 92.2% 81.3%
4l8jA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.53 44.0 3.94e-01 100.0% 64.2%
2gtlN02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.53 45.0 3.40e-01 100.0% 66.5%
1dgsA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 38.0 3.70e-01 82.8% 71.2%
2gtlM02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.51 43.0 3.29e-01 100.0% 69.9%
2b2cA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.50 38.0 3.84e-01 96.9% 85.9%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3881126 4.1.1.361 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_KDM3B, PWWP_KDM3B, DUF7030 0.76 61.0 4.01e-01 100.0% 22.4%
3881192 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 58.0 4.15e-01 100.0% 31.8%
3519308 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 59.0 6.12e-01 98.4% 95.0%
3886492 4.1.1.154 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4772 0.72 60.0 5.64e-01 100.0% 76.0%
3183093 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 64.0 4.86e-01 100.0% 49.3%
3550699 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.69 59.0 5.16e-01 100.0% 63.2%
3624304 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.69 63.0 5.46e-01 100.0% 82.1%
3410370 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 58.0 5.62e-01 100.0% 82.9%
3675120 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.69 63.0 5.66e-01 100.0% 75.3%
4229837 4.1.1.354 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY, PF28930 0.69 62.0 4.40e-01 100.0% 41.1%
3908789 4.1.1.354 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY, PF28930 0.68 62.0 3.99e-01 100.0% 26.7%
3873627 4.1.1.354 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY, PF28930 0.68 62.0 5.05e-01 100.0% 66.1%
3430260 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.68 60.0 3.71e-01 96.9% 35.9%
3493399 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.68 62.0 4.53e-01 100.0% 46.7%
573 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.67 61.0 5.30e-01 100.0% 80.0%
3798523 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 59.0 5.54e-01 100.0% 92.5%
3729690 4.1.1.170 ↗ beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind 0.66 60.0 5.23e-01 100.0% 77.9%
2978978 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.66 57.0 5.38e-01 100.0% 80.0%
3205674 206.1.1.14 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › ABC1 0.63 55.0 3.62e-01 100.0% 50.2%
3521181 4.1.1.229 ↗ beta barrels › SH3 › SH3 › SH3 0.63 56.0 4.09e-01 100.0% 41.1%
3828614 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.63 57.0 4.72e-01 100.0% 74.5%
3572649 4.1.1.230 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7030 0.62 55.0 5.13e-01 100.0% 95.0%
3198505 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 55.0 4.14e-01 100.0% 65.2%
3190995 4.8.1.22 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.61 54.0 3.94e-01 100.0% 41.7%
3601811 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.60 54.0 3.83e-01 100.0% 40.7%
4012953 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.60 53.0 4.06e-01 100.0% 48.7%
3687369 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.60 53.0 4.57e-01 100.0% 73.0%
3437430 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.60 42.0 4.28e-01 95.3% 75.4%
4152374 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 51.0 4.73e-01 100.0% 76.2%
2971257 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.59 47.0 4.69e-01 100.0% 86.2%
4073608 1.1.5.57 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Mycop_pep_DUF31 0.59 51.0 3.80e-01 100.0% 73.3%
4018672 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.59 52.0 4.33e-01 100.0% 60.9%
4971071 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.59 41.0 4.35e-01 95.3% 87.3%
3646145 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.59 52.0 3.14e-01 96.9% 23.6%
3721700 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 51.0 3.85e-01 100.0% 57.5%
4114201 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.58 42.0 4.24e-01 96.9% 76.9%
3703936 4.18.1.0 ↗ beta barrels › SH3 › Plus3 › Plus3 0.58 51.0 4.04e-01 100.0% 53.3%
5041849 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.58 41.0 4.32e-01 96.9% 89.1%
4456205 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.58 40.0 4.19e-01 96.9% 87.3%
4039571 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.57 41.0 4.29e-01 96.9% 89.1%
3328685 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.57 40.0 4.04e-01 96.9% 73.8%
4938053 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.57 49.0 4.71e-01 100.0% 84.0%
4076873 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.57 39.0 4.14e-01 95.3% 85.5%
3736329 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.57 50.0 3.63e-01 98.4% 40.6%
4174957 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.56 47.0 3.45e-01 100.0% 37.9%
4877991 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.56 48.0 4.14e-01 98.4% 72.1%
3973362 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.55 39.0 3.68e-01 96.9% 61.3%
3987332 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.54 38.0 4.00e-01 96.9% 89.1%
3923681 3257.1.1.1 ↗ a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N 0.53 44.0 3.24e-01 98.4% 64.5%
3240679 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.52 39.0 3.05e-01 85.9% 61.9%
3988859 1.1.7.91 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25940 0.52 44.0 3.86e-01 100.0% 61.9%
3698791 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.52 42.0 4.18e-01 96.9% 85.7%
3255870 2.1.1.26 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB 0.51 37.0 3.26e-01 79.7% 69.5%