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LC121084.1__BAU40130.1__X__00172

Bact-Vir

LC121084.1__BAU40130.1__X__00172

Identity

Accession:
LC121084 ↗
Kingdom:
phage

Quality

78.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Ackermannviridae› Ralstonia_phage_RSP15

TaxID: 1785960

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-88
PDB
Domain cluster: rep: MG592609.1__AUR97872.1__NVP1244A_170__00170__D10-90
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6gp1A00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.65 41.0 4.49e-01 70.0% 78.5%
2pb7A01 2.30.280.10 Mainly Beta › Roll › PUA domain-like › SRA-YDG 0.63 43.0 3.33e-01 71.2% 79.1%
6m9yA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.62 40.0 4.57e-01 72.5% 93.0%
2pmbA01 3.30.1850.10 Alpha Beta › 2-Layer Sandwich › MCP/YpsA-like › MoCo carrier protein-like 0.61 52.0 4.78e-01 96.2% 81.3%
3bioA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.60 40.0 3.55e-01 80.0% 47.4%
1ul7A00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.58 44.0 4.14e-01 92.5% 64.7%
2bz0A00 3.40.50.10990 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › GTP cyclohydrolase II 0.55 44.0 3.55e-01 90.0% 79.2%
2wqlA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 45.0 3.77e-01 93.8% 53.3%
2fdoA00 3.30.1970.10 Alpha Beta › 2-Layer Sandwich › AF2331-like fold › AF2331-like 0.54 40.0 3.81e-01 81.2% 67.7%
4kktA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.53 44.0 4.10e-01 95.0% 94.3%
2ql8A00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.53 43.0 3.62e-01 90.0% 55.7%
5a67A00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.52 45.0 3.43e-01 100.0% 83.0%
4le7A01 2.90.10.30 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › 0.52 43.0 3.44e-01 92.5% 94.2%
1ig8A02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 35.0 2.96e-01 100.0% 41.0%
1k8wA01 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.52 41.0 2.95e-01 86.3% 36.9%
3lw6A00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.51 35.0 2.53e-01 71.2% 75.1%
2b9dA01 3.30.160.330 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 23.0 3.10e-01 92.5% 84.6%
1pu1A00 3.30.300.100 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like 0.50 42.0 4.05e-01 93.8% 90.1%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.50 30.0 3.35e-01 86.3% 79.7%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4156749 3234.1.1.2 ↗ a+b two layers › GerBC protein › GerBC protein › GerBC protein › Spore_GerAC, Spore_GerAC_N 0.68 52.0 3.55e-01 82.5% 51.2%
3665093 109.4.1.338 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RIC1 0.61 35.0 2.26e-01 100.0% 11.7%
4666632 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.60 41.0 3.80e-01 70.0% 64.0%
3676472 868.1.1.1 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH 0.59 53.0 3.88e-01 100.0% 83.6%
3591568 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 47.0 4.46e-01 91.3% 77.0%
4668748 327.4.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › YhbC-like, N-terminal domain › YhbC-like, N-terminal domain › RimP_N 0.58 46.0 4.46e-01 90.0% 76.7%
4387110 327.4.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › YhbC-like, N-terminal domain › YhbC-like, N-terminal domain › RimP_N 0.58 46.0 4.37e-01 91.3% 72.0%
5056723 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 45.0 4.31e-01 87.5% 94.7%
4120507 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.57 46.0 4.38e-01 96.2% 75.8%
3577681 883.1.1.2 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C 0.56 43.0 3.08e-01 85.0% 37.0%
4147215 327.4.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › YhbC-like, N-terminal domain › YhbC-like, N-terminal domain › RimP_N 0.56 46.0 4.41e-01 91.3% 77.9%
3714873 4.1.1.4 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,Ribosomal_L27e 0.54 45.0 3.81e-01 97.5% 80.0%
7745 4102.1.1.1 ↗ a+b duplicates or obligate multimers › AF2331-like › AF2331-like › AF2331-like › AF2331-like 0.54 40.0 3.83e-01 81.2% 68.5%
5049140 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.54 38.0 3.95e-01 88.7% 80.0%
3515524 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 43.0 3.64e-01 90.0% 52.9%
5045252 878.1.1.1 ↗ a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.53 43.0 4.09e-01 91.3% 79.0%
4954522 878.1.1.1 ↗ a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.53 44.0 4.20e-01 92.5% 85.1%
4002369 304.47.1.0 ↗ a+b two layers › Alpha-beta plaits › SEA domain › SEA domain 0.53 43.0 4.16e-01 90.0% 84.4%
4981304 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.53 45.0 4.23e-01 100.0% 77.1%
3177469 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 37.0 3.89e-01 85.0% 85.7%
4934542 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.52 34.0 3.41e-01 88.7% 64.7%
5049862 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 33.0 2.63e-01 93.8% 30.9%