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LC121084.1__BAU40163.1__X__00205
Bact-VirLC121084.1__BAU40163.1__X__00205
Identity
- Accession:
- LC121084 ↗
- Kingdom:
- phage
Quality
66.0
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Ackermannviridae›
Ralstonia_phage_RSP15
TaxID: 1785960
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 30-80
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1y71A00 | 2.30.30.430 | Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain | 0.74 | 55.0 | 4.33e-01 | 82.4% | 66.1% |
| 3owaA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.64 | 52.0 | 3.87e-01 | 94.1% | 70.3% |
| 2sqcA02 | 1.50.10.20 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.58 | 46.0 | 2.99e-01 | 96.1% | 61.0% |
| 2crqA01 | 3.30.110.10 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Translation initiation factor 3 (IF-3), C-terminal domain | 0.58 | 42.0 | 3.55e-01 | 78.4% | 70.9% |
| 3llmA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 49.0 | 3.22e-01 | 98.0% | 64.9% |
| 2l9bA00 | 1.25.40.630 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.54 | 40.0 | 3.47e-01 | 86.3% | 92.3% |
| 2hngA00 | 3.10.420.10 | Alpha Beta › Roll › Bacterial Protein-export protein SecB › SecB-like | 0.53 | 42.0 | 3.23e-01 | 88.2% | 93.6% |
| 4dmgA03 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.50 | 39.0 | 2.80e-01 | 100.0% | 61.1% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 552 | 4.1.1.61 ↗ | beta barrels › SH3 › SH3 › SH3 › KapB | 0.74 | 55.0 | 4.33e-01 | 82.4% | 66.1% |
| 3220585 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.72 | 56.0 | 5.46e-01 | 84.3% | 80.0% |
| 4947103 | 1085.1.1.0 ↗ | few secondary structure elements › Archaea X-group 1085 › Archaea H-group 1085.1 › Archaea T-group 1085.1.1 | 0.70 | 55.0 | 4.52e-01 | 84.3% | 84.4% |
| 3355500 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.68 | 51.0 | 2.90e-01 | 78.4% | 19.8% |
| 3512916 | 109.4.1.63 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TAP42 | 0.67 | 52.0 | 3.57e-01 | 84.3% | 34.2% |
| 3926647 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.63 | 49.0 | 3.76e-01 | 92.2% | 35.7% |
| 3657213 | 192.6.1.1 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain › ATP-synt_DE | 0.62 | 41.0 | 3.97e-01 | 74.5% | 58.3% |
| 3717778 | 7585.1.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Sec1 | 0.59 | 46.0 | 3.50e-01 | 84.3% | 54.2% |
| 4295669 | 2002.1.1.132 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › GcpE | 0.54 | 46.0 | 2.82e-01 | 96.1% | 25.6% |