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LC121084.1__BAU40172.1__X__00214

Bact-Vir

LC121084.1__BAU40172.1__X__00214

Identity

Accession:
LC121084 ↗
Kingdom:
phage

Quality

62.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Ackermannviridae› Ralstonia_phage_RSP15

TaxID: 1785960

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 41-125
PDB
Domain cluster: rep: KC465899.1__AGE60477.1__X__00143__D48-111
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7v5yA01 3.40.1620.10 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › YefM-like domain 0.63 34.0 4.10e-01 74.1% 84.3%
3hf7A00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.62 38.0 3.31e-01 83.5% 40.9%
3k2tA01 3.30.505.50 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain 0.62 31.0 3.89e-01 74.1% 84.8%
7agpA01 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.57 30.0 3.40e-01 75.3% 67.2%
7ahbB01 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.55 29.0 3.35e-01 76.5% 71.2%
3zcoA00 1.10.10.2450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.54 37.0 3.33e-01 71.8% 99.2%
7mi4A01 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.54 43.0 3.33e-01 87.1% 47.7%
4oa3A00 3.10.310.50 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.54 40.0 3.44e-01 82.4% 48.2%
2xi5A00 3.40.91.60 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.53 39.0 3.08e-01 78.8% 72.8%
5anpA00 3.10.310.50 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.53 38.0 3.24e-01 77.6% 45.5%
2xmjA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 29.0 3.19e-01 82.4% 68.3%
3pc3A03 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.52 41.0 3.45e-01 85.9% 59.7%
8d3mI01 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.52 42.0 3.17e-01 88.2% 49.3%
3gr5A02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.52 31.0 3.38e-01 83.5% 72.1%
2bv6A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 34.0 2.95e-01 80.0% 41.9%
6pcoC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 34.0 2.98e-01 85.9% 44.7%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4015596 3873.1.1.0 ↗ a+b two layers › Serine/threonine-protein kinase GCN2 C-terminal domain › Serine/threonine-protein kinase GCN2 C-terminal domain › Serine/threonine-protein kinase GCN2 C-terminal domain 0.73 56.0 4.96e-01 81.2% 72.5%
3177022 3873.1.1.1 ↗ a+b two layers › Serine/threonine-protein kinase GCN2 C-terminal domain › Serine/threonine-protein kinase GCN2 C-terminal domain › Serine/threonine-protein kinase GCN2 C-terminal domain › HGTP_anticodon2 0.72 55.0 4.87e-01 82.4% 70.2%
2807919 4267.1.1.1 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox 0.63 36.0 4.15e-01 78.8% 81.0%
4048956 2008.1.1.4 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.61 42.0 3.28e-01 83.5% 34.3%
3388537 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.56 48.0 3.07e-01 100.0% 79.0%
3651195 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.56 33.0 3.50e-01 83.5% 65.3%
5074452 2002.1.1.32 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Oxidored_FMN 0.56 42.0 2.84e-01 81.2% 30.2%
3992384 2008.1.1.29 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Dna2 0.55 45.0 3.36e-01 89.4% 44.5%
4107642 2008.1.1.29 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Dna2 0.55 45.0 3.17e-01 89.4% 37.8%
5082574 2008.1.1.4 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.55 40.0 3.24e-01 83.5% 40.6%
4242672 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.55 46.0 3.45e-01 90.6% 44.0%
3761598 2008.1.1.29 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Dna2 0.54 45.0 3.06e-01 90.6% 33.5%
235960 101.1.2.229 ↗ alpha arrays › HTH › HTH › winged helix domain › SIR3_C 0.54 37.0 3.33e-01 71.8% 99.2%
4948539 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.54 32.0 3.14e-01 81.2% 50.0%
4980356 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.54 36.0 3.18e-01 89.4% 46.2%
3678465 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.54 34.0 3.48e-01 85.9% 64.7%
3744035 2008.1.1.29 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Dna2 0.54 44.0 3.10e-01 89.4% 38.9%
5066595 2008.1.1.4 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.54 44.0 3.41e-01 90.6% 51.0%
3574786 2.1.1.44 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.53 44.0 3.06e-01 90.6% 43.1%
3837602 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 42.0 2.88e-01 85.9% 34.8%
3232477 101.1.15.0 ↗ alpha arrays › HTH › HTH › HAT1, C-terminal domain 0.53 36.0 3.51e-01 85.9% 61.0%
4180620 2008.1.1.4 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.53 44.0 3.42e-01 90.6% 51.9%
4325633 327.11.2.38 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_SLS1_1 0.52 30.0 3.39e-01 83.5% 76.7%
2985793 2008.1.1.4 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.52 41.0 3.06e-01 85.9% 36.2%
4026764 3105.1.1.4 ↗ a+b three layers › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › MOLO1 0.51 38.0 3.11e-01 78.8% 48.1%
3666060 2008.1.1.29 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Dna2 0.51 41.0 2.86e-01 88.2% 40.0%
3797963 3105.1.1.4 ↗ a+b three layers › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › MOLO1 0.51 37.0 2.90e-01 77.6% 50.8%
1291586 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.50 34.0 2.98e-01 78.8% 43.2%