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LC121084.1__BAU40175.1__X__00217
Bact-VirLC121084.1__BAU40175.1__X__00217
Identity
- Accession:
- LC121084 ↗
- Kingdom:
- phage
Quality
96.2
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Ackermannviridae›
Ralstonia_phage_RSP15
TaxID: 1785960
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-67
Domain cluster:
rep: SCNpilot_BF_INOC_scaffold_63_prodigal-single.1__X__X__00270__D5-61
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1yvuA02 | 2.30.340.10 | Mainly Beta › Roll › PAZ domain fold › PAZ domain superfamily | 0.71 | 61.0 | 5.42e-01 | 95.5% | 100.0% |
| 4dq2A03 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 46.0 | 5.12e-01 | 89.4% | 100.0% |
| 2lqkA00 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.67 | 57.0 | 5.68e-01 | 97.0% | 92.9% |
| 2fhdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 49.0 | 5.01e-01 | 89.4% | 88.7% |
| 3wa2X02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.64 | 49.0 | 4.33e-01 | 84.8% | 81.4% |
| 4iupA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 57.0 | 5.58e-01 | 100.0% | 100.0% |
| 3q5zA02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.63 | 51.0 | 4.23e-01 | 90.9% | 74.4% |
| 2wbfX00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.62 | 54.0 | 3.64e-01 | 100.0% | 42.3% |
| 3j7yD02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 53.0 | 5.04e-01 | 98.5% | 81.5% |
| 2lt1A00 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.62 | 53.0 | 5.12e-01 | 97.0% | 89.3% |
| 5ycqA00 | 2.30.30.390 | Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain | 0.61 | 54.0 | 5.09e-01 | 95.5% | 92.2% |
| 1vwxA02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 53.0 | 5.00e-01 | 98.5% | 85.0% |
| 4b6mB00 | 2.30.30.190 | Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain | 0.61 | 49.0 | 4.73e-01 | 92.4% | 94.9% |
| 1vw4I00 | 2.40.150.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L14 › Ribosomal protein L14/L23 | 0.61 | 49.0 | 3.97e-01 | 87.9% | 64.8% |
| 5kcoA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 44.0 | 4.64e-01 | 89.4% | 91.5% |
| 4oijA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.60 | 42.0 | 4.12e-01 | 81.8% | 67.6% |
| 3urgA02 | 2.30.30.530 | Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain | 0.58 | 45.0 | 4.60e-01 | 89.4% | 92.1% |
| 3v9fA02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.58 | 46.0 | 2.95e-01 | 86.4% | 21.1% |
| 1txqA00 | 2.30.30.190 | Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain | 0.57 | 50.0 | 4.80e-01 | 95.5% | 100.0% |
| 3vb0A01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.57 | 45.0 | 3.67e-01 | 87.9% | 92.2% |
| 5yrzB00 | 3.30.920.30 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. | 0.57 | 42.0 | 4.42e-01 | 95.5% | 91.4% |
| 4p5nA00 | 2.30.30.1060 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 48.0 | 4.66e-01 | 100.0% | 90.5% |
| 2o07A01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.55 | 42.0 | 4.38e-01 | 83.3% | 91.5% |
| 2j42A02 | 2.60.120.240 | Mainly Beta › Sandwich › Jelly Rolls › Protective antigen, heptamerisation domain | 0.55 | 42.0 | 3.07e-01 | 83.3% | 79.2% |
| 1elvA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.55 | 41.0 | 3.59e-01 | 80.3% | 86.7% |
| 2gfuA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 46.0 | 3.77e-01 | 100.0% | 49.3% |
| 4ntcA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.54 | 43.0 | 3.53e-01 | 87.9% | 89.5% |
| 3o4fC01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.54 | 38.0 | 4.23e-01 | 80.3% | 98.0% |
| 1avgI00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.54 | 45.0 | 3.66e-01 | 100.0% | 82.4% |
| 5t1dB00 | 3.10.390.20 | Alpha Beta › Roll › SAND domain › Viral glycoprotein L | 0.53 | 34.0 | 2.99e-01 | 74.2% | 42.4% |
| 2vszB02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 45.0 | 3.84e-01 | 100.0% | 97.4% |
| 1jkgA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 40.0 | 3.29e-01 | 86.4% | 82.0% |
| 6f2mA02 | 2.40.30.290 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.52 | 45.0 | 4.17e-01 | 98.5% | 95.4% |
| 4ffuB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.52 | 40.0 | 3.22e-01 | 89.4% | 94.7% |
| 4mxtA00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.51 | 39.0 | 2.85e-01 | 84.8% | 71.1% |
ECOD (53)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3948467 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.79 | 72.0 | 7.30e-01 | 97.0% | 100.0% |
| 4077367 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.77 | 69.0 | 7.04e-01 | 97.0% | 100.0% |
| 4997059 | 4.1.1.139 ↗ | beta barrels › SH3 › SH3 › SH3 › IF5A-like_N | 0.75 | 68.0 | 6.54e-01 | 100.0% | 93.3% |
| 3709896 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.75 | 68.0 | 6.25e-01 | 100.0% | 92.9% |
| 5004050 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 55.0 | 5.39e-01 | 93.9% | 77.1% |
| 5017637 | 4.1.1.458 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF2098 | 0.71 | 53.0 | 5.67e-01 | 97.0% | 94.5% |
| 4974669 | 4.1.1.458 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF2098 | 0.71 | 54.0 | 4.87e-01 | 100.0% | 60.0% |
| 5066224 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.68 | 60.0 | 5.39e-01 | 100.0% | 71.1% |
| 3573739 | 4.1.1.85 ↗ | beta barrels › SH3 › SH3 › SH3 › MTR4_beta-barrel | 0.68 | 56.0 | 4.64e-01 | 90.9% | 77.4% |
| 3622641 | 4.1.1.85 ↗ | beta barrels › SH3 › SH3 › SH3 › MTR4_beta-barrel | 0.67 | 57.0 | 4.67e-01 | 93.9% | 76.7% |
| 3713588 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 58.0 | 5.13e-01 | 97.0% | 98.9% |
| 3391463 | 4.18.1.1 ↗ | beta barrels › SH3 › Plus3 › Plus3 › Plus-3 | 0.66 | 58.0 | 4.74e-01 | 100.0% | 84.8% |
| 3982999 | 4.1.1.60 ↗ | beta barrels › SH3 › SH3 › SH3 › YccV-like | 0.66 | 57.0 | 4.95e-01 | 95.5% | 89.0% |
| 3691620 | 4.1.1.225 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7025 | 0.65 | 56.0 | 4.71e-01 | 98.5% | 80.9% |
| 4025294 | 4.1.1.60 ↗ | beta barrels › SH3 › SH3 › SH3 › YccV-like | 0.64 | 52.0 | 4.80e-01 | 92.4% | 83.3% |
| 4024178 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.64 | 50.0 | 3.11e-01 | 86.4% | 22.5% |
| 3939982 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 56.0 | 4.73e-01 | 98.5% | 65.5% |
| 3938484 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 55.0 | 4.57e-01 | 98.5% | 73.3% |
| 3181439 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 55.0 | 4.71e-01 | 98.5% | 96.3% |
| 3256053 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.63 | 55.0 | 4.93e-01 | 95.5% | 72.2% |
| 3801220 | 206.1.1.8 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PI3_PI4_kinase,FATC | 0.63 | 48.0 | 2.91e-01 | 81.8% | 22.7% |
| 3185323 | 4.1.1.60 ↗ | beta barrels › SH3 › SH3 › SH3 › YccV-like | 0.63 | 52.0 | 4.49e-01 | 95.5% | 79.1% |
| 3593976 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 53.0 | 4.35e-01 | 98.5% | 60.8% |
| 3360171 | 4.1.1.18 ↗ | beta barrels › SH3 › SH3 › SH3 › CAP_GLY | 0.62 | 53.0 | 4.22e-01 | 97.0% | 56.5% |
| 4050042 | 4.1.1.441 ↗ | beta barrels › SH3 › SH3 › SH3 › PF26332 | 0.62 | 52.0 | 4.94e-01 | 93.9% | 95.0% |
| 3627576 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 51.0 | 5.19e-01 | 89.4% | 100.0% |
| 3264469 | 4.1.1.309 ↗ | beta barrels › SH3 › SH3 › SH3 › MRP-S34 | 0.62 | 54.0 | 4.96e-01 | 97.0% | 96.5% |
| 3929839 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 53.0 | 4.19e-01 | 95.5% | 69.6% |
| 3584555 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.61 | 52.0 | 5.11e-01 | 92.4% | 98.6% |
| 5043533 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 50.0 | 5.06e-01 | 92.4% | 98.4% |
| 3591306 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 49.0 | 4.85e-01 | 89.4% | 98.6% |
| 3592790 | 4.1.1.18 ↗ | beta barrels › SH3 › SH3 › SH3 › CAP_GLY | 0.61 | 51.0 | 4.37e-01 | 95.5% | 92.7% |
| 5079843 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.61 | 50.0 | 5.10e-01 | 92.4% | 96.9% |
| 5031165 | 4.1.1.93 ↗ | beta barrels › SH3 › SH3 › SH3 › 40S_S4_C | 0.61 | 51.0 | 5.02e-01 | 98.5% | 88.6% |
| 3886492 | 4.1.1.154 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4772 | 0.59 | 46.0 | 4.54e-01 | 92.4% | 86.7% |
| 4020073 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 50.0 | 4.96e-01 | 98.5% | 94.3% |
| 3586469 | 4.1.1.287 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5641 | 0.58 | 51.0 | 4.73e-01 | 100.0% | 80.0% |
| 3586562 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 48.0 | 4.47e-01 | 100.0% | 84.7% |
| 5039031 | 220.1.1.76 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 | 0.56 | 44.0 | 3.81e-01 | 87.9% | 79.1% |
| 3738249 | 5.1.4.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH | 0.56 | 43.0 | 2.76e-01 | 84.8% | 19.5% |
| 3519308 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 43.0 | 4.42e-01 | 86.4% | 96.7% |
| 3647116 | 220.1.1.78 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 | 0.55 | 49.0 | 4.00e-01 | 100.0% | 81.6% |
| 3290954 | 220.1.1.76 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 | 0.55 | 43.0 | 3.88e-01 | 89.4% | 83.2% |
| 3189705 | 2003.1.2.9 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GDI | 0.54 | 47.0 | 2.88e-01 | 97.0% | 77.3% |
| 3258931 | 219.1.1.13 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core | 0.54 | 45.0 | 3.06e-01 | 100.0% | 77.9% |
| 3596413 | 7.1.1.5 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 | 0.54 | 44.0 | 3.96e-01 | 89.4% | 92.2% |
| 3253077 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.53 | 46.0 | 3.72e-01 | 100.0% | 80.0% |
| 3956353 | 220.1.1.76 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 | 0.53 | 41.0 | 3.82e-01 | 87.9% | 74.1% |
| 3401098 | 4.1.1.284 ↗ | beta barrels › SH3 › SH3 › SH3 › SBNO | 0.52 | 43.0 | 3.55e-01 | 93.9% | 51.2% |
| 5058109 | 220.1.1.76 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 | 0.52 | 37.0 | 3.50e-01 | 81.8% | 82.2% |
| 4032084 | 220.1.1.76 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 | 0.51 | 38.0 | 3.49e-01 | 84.8% | 73.7% |
| 3653284 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.51 | 37.0 | 3.27e-01 | 80.3% | 70.5% |
| 4936963 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.50 | 42.0 | 3.99e-01 | 100.0% | 96.5% |