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LC121084.1__BAU40197.1__X__00239
Bact-VirLC121084.1__BAU40197.1__X__00239
Identity
- Accession:
- LC121084 ↗
- Kingdom:
- phage
Quality
89.1
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Ackermannviridae›
Ralstonia_phage_RSP15
TaxID: 1785960
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-40_104-141
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3gr0D01 | 3.30.70.1780 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 25.0 | 3.36e-01 | 75.6% | 70.7% |
| 5xilA02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.56 | 45.0 | 3.96e-01 | 93.6% | 63.3% |
| 2fm7A00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.56 | 35.0 | 3.85e-01 | 70.5% | 79.0% |
| 5khaB01 | 3.60.110.10 | Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase | 0.56 | 45.0 | 3.22e-01 | 91.0% | 90.0% |
| 3cs3A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.55 | 45.0 | 3.76e-01 | 89.7% | 81.2% |
| 2i4lB02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.55 | 45.0 | 4.18e-01 | 92.3% | 88.1% |
| 5jldA02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.54 | 42.0 | 3.04e-01 | 83.3% | 84.9% |
| 7t85A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 36.0 | 2.84e-01 | 78.2% | 33.5% |
| 4lhpF00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.52 | 41.0 | 3.47e-01 | 85.9% | 79.2% |
| 4wnyA00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.51 | 41.0 | 3.50e-01 | 89.7% | 75.0% |
| 2pueA03 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 41.0 | 3.46e-01 | 93.6% | 81.0% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4960251 | 2008.1.1.16 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat | 0.59 | 42.0 | 3.57e-01 | 75.6% | 82.7% |
| 3640450 | 2004.1.1.150 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DRMBL | 0.56 | 46.0 | 3.63e-01 | 93.6% | 90.9% |
| 4956819 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.52 | 34.0 | 3.08e-01 | 71.8% | 46.4% |
| 3719851 | 3003.1.1.0 ↗ | a+b complex topology › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) | 0.51 | 35.0 | 3.15e-01 | 71.8% | 94.2% |
| None | — | 0.51 | 41.0 | 2.91e-01 | 92.3% | 91.8% | |
| 3405400 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.50 | 43.0 | 3.21e-01 | 100.0% | 60.0% |
D2
medium
residues 41-103
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00075.31 best | RNase_H | 33.1 | 8.40e-08 | 100.0% | 46.1% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qkbA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.88 | 82.0 | 5.99e-01 | 100.0% | 44.1% |
| 4ibnA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.86 | 79.0 | 5.47e-01 | 100.0% | 74.5% |
| 1f21A00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.81 | 73.0 | 5.44e-01 | 100.0% | 44.1% |
| 7kseA02 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.79 | 70.0 | 5.34e-01 | 100.0% | 48.6% |
| 7va8A01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.60 | 51.0 | 3.46e-01 | 100.0% | 45.8% |
| 5gujA02 | 3.40.1360.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 › | 0.57 | 33.0 | 2.67e-01 | 96.8% | 26.4% |
| 2qsxA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.57 | 36.0 | 3.26e-01 | 96.8% | 43.6% |
| 3mz1B01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.55 | 37.0 | 3.25e-01 | 100.0% | 42.5% |
| 3wxmB03 | 3.30.1330.30 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 | 0.54 | 41.0 | 3.50e-01 | 84.1% | 78.5% |
| 2ekcB00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.52 | 41.0 | 2.77e-01 | 88.9% | 25.7% |
| 3szpB02 | 3.40.190.290 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › | 0.51 | 35.0 | 2.52e-01 | 71.4% | 65.8% |
| 6wm6A01 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.51 | 36.0 | 2.56e-01 | 77.8% | 64.9% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4046363 | 2484.1.1.4 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H | 0.90 | 84.0 | 6.03e-01 | 100.0% | 79.9% |
| 3482477 | 2484.1.1.4 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H | 0.89 | 82.0 | 6.05e-01 | 100.0% | 48.0% |
| 4270370 | 2484.1.1.4 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H | 0.89 | 80.0 | 5.67e-01 | 96.8% | 78.2% |
| 4639740 | 2484.1.1.4 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H | 0.88 | 82.0 | 5.98e-01 | 100.0% | 83.0% |
| 4612839 | 2484.1.1.4 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H | 0.88 | 81.0 | 5.95e-01 | 100.0% | 81.9% |
| 4284812 | 2484.1.1.4 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H | 0.88 | 82.0 | 5.88e-01 | 100.0% | 81.2% |
| 4382913 | 2484.1.1.4 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H | 0.87 | 81.0 | 5.95e-01 | 100.0% | 44.7% |
| 3938447 | 2484.1.1.4 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H | 0.85 | 78.0 | 5.63e-01 | 100.0% | 40.6% |
| 4309543 | 2484.1.1.4 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H | 0.85 | 78.0 | 5.89e-01 | 100.0% | 47.1% |
| 3938170 | 2484.1.1.4 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H | 0.79 | 71.0 | 5.32e-01 | 100.0% | 43.3% |
| 3934027 | 2484.1.1.4 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H | 0.79 | 71.0 | 5.00e-01 | 100.0% | 35.1% |
| 3375728 | 2484.5.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH | 0.75 | 62.0 | 4.79e-01 | 100.0% | 41.4% |
| 4962281 | 2484.1.1.67 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 | 0.71 | 63.0 | 4.56e-01 | 98.4% | 71.6% |
| 5064572 | 2484.1.1.4 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H | 0.71 | 59.0 | 4.63e-01 | 100.0% | 44.6% |
| 3924190 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.67 | 57.0 | 4.30e-01 | 100.0% | 86.1% |
| 5007625 | 4244.1.1.0 ↗ | a/b three-layered sandwiches › EreA/ChaN-like › EreA/ChaN-like › EreA/ChaN-like | 0.58 | 49.0 | 3.36e-01 | 100.0% | 48.3% |
| 4176786 | 2002.1.1.102 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP | 0.57 | 42.0 | 2.74e-01 | 81.0% | 67.9% |
| 4994951 | 2006.1.4.13 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_9 | 0.57 | 48.0 | 3.87e-01 | 96.8% | 85.4% |
| 3191401 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.56 | 44.0 | 3.68e-01 | 88.9% | 81.7% |
| 3324497 | 2484.1.1.67 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 | 0.56 | 45.0 | 3.78e-01 | 92.1% | 84.3% |
| 3395967 | 2006.1.4.10 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_4 | 0.55 | 44.0 | 3.32e-01 | 92.1% | 96.5% |
| 4979039 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.55 | 40.0 | 2.83e-01 | 79.4% | 99.0% |
| 3327377 | 301.1.1.5 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › SpoU_sub_bind | 0.54 | 41.0 | 3.43e-01 | 85.7% | 62.5% |
| 4983366 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.54 | 45.0 | 3.66e-01 | 95.2% | 95.2% |
| 4939278 | 2007.1.2.61 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Fe-ADH_2 | 0.54 | 36.0 | 3.21e-01 | 100.0% | 45.0% |
| 4172297 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.52 | 44.0 | 3.30e-01 | 98.4% | 82.7% |
| 4943578 | 301.1.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like | 0.52 | 37.0 | 3.20e-01 | 76.2% | 79.0% |
| 3931610 | 300.1.1.9 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › MIT_C | 0.51 | 36.0 | 2.66e-01 | 76.2% | 63.8% |
| 3368127 | 2005.1.1.41 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CHX17_C | 0.51 | 44.0 | 3.69e-01 | 100.0% | 60.0% |
| 5010109 | 2002.1.1.134 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_2 | 0.51 | 37.0 | 2.53e-01 | 81.0% | 60.4% |
| 4251070 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.50 | 40.0 | 3.44e-01 | 88.9% | 78.1% |
| 4041525 | 2006.1.3.6 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 | 0.50 | 34.0 | 2.80e-01 | 71.4% | 71.7% |
| 5056125 | 2008.1.1.14 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Vsr | 0.50 | 41.0 | 3.28e-01 | 92.1% | 60.0% |