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LC168164.1__BAV39360.1__BPT24_240__00236

Bact-Vir

LC168164.1__BAV39360.1__BPT24_240__00236

Identity

Accession:
LC168164 ↗
Kingdom:
phage

Quality

97.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Kungbxnavirus› Tenacibaculum_phage_pT24

TaxID: 1880590

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-67
PDB
Domain cluster: rep: OR413585.1__WNT48504.1__SPLA5c_PHROGS00012__00011__D2-78
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.66 52.0 5.03e-01 87.9% 88.2%
2qsdA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.66 48.0 4.82e-01 77.3% 82.1%
1mvpA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.64 53.0 4.41e-01 89.4% 75.0%
3rgzA02 3.30.1490.310 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.63 46.0 4.77e-01 80.3% 85.2%
3znuA00 3.30.70.1060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel 0.61 44.0 3.97e-01 78.8% 91.5%
2g9oA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 43.0 4.13e-01 77.3% 97.4%
3a21A03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 45.0 3.95e-01 81.8% 77.2%
2hv2A03 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.59 44.0 3.36e-01 78.8% 100.0%
3hvnA01 3.90.840.10 Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain 0.58 44.0 3.29e-01 81.8% 40.7%
2n59A00 2.60.40.2420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 43.0 3.75e-01 80.3% 56.4%
3b82A06 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 44.0 3.67e-01 86.4% 73.6%
1rtzA00 3.30.70.560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK 0.56 41.0 3.26e-01 80.3% 62.5%
5is2A01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.56 40.0 3.69e-01 78.8% 90.1%
1vloA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.55 40.0 3.63e-01 77.3% 83.5%
4g7xB00 3.30.1150.10 Alpha Beta › 2-Layer Sandwich › Fusion Protein Consisting Of Minor Coat Protein, Glycine Rich Linker, Tola, And A His Tag; Chain: A; Domain 2 › 0.55 45.0 4.05e-01 97.0% 85.3%
2oo3A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 39.0 2.67e-01 80.3% 32.6%
1r5bA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 39.0 3.31e-01 77.3% 98.2%
2rcaA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.51 40.0 3.45e-01 87.9% 99.1%
3mh9A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.51 39.0 2.85e-01 86.4% 84.9%
1zpwX00 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 43.0 4.00e-01 93.9% 95.1%
1qltA03 3.40.462.10 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidases, C-terminal domain 0.50 44.0 3.04e-01 98.5% 79.2%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5080205 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.79 57.0 6.50e-01 80.3% 100.0%
5012895 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.73 53.0 5.84e-01 75.8% 100.0%
3249515 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 49.0 5.17e-01 74.2% 100.0%
223776 3115.4.1.1 ↗ a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 › DUF1543 0.67 53.0 5.25e-01 86.4% 95.8%
5012877 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.59 44.0 4.27e-01 80.3% 89.3%
3989300 821.1.1.3 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 0.59 51.0 4.39e-01 98.5% 78.2%
4556494 304.56.1.2 ↗ a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.59 46.0 4.15e-01 86.4% 94.6%
4027800 304.57.1.0 ↗ a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like 0.58 44.0 3.93e-01 83.3% 95.8%
3722424 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.57 42.0 3.72e-01 80.3% 84.0%
4948262 304.24.1.1 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.57 42.0 4.12e-01 81.8% 100.0%
4260605 304.56.1.2 ↗ a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.57 45.0 4.02e-01 86.4% 93.5%
4426624 304.56.1.2 ↗ a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.56 44.0 4.08e-01 84.8% 98.8%
3398922 304.24.1.1 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.56 45.0 4.09e-01 87.9% 92.2%
3253379 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 43.0 3.70e-01 83.3% 66.7%
3270626 10.32.1.3 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.56 40.0 3.28e-01 77.3% 72.8%
4414821 304.56.1.2 ↗ a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.55 43.0 3.83e-01 84.8% 94.7%
3236583 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.55 42.0 3.45e-01 84.8% 60.0%
3664713 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.54 48.0 2.76e-01 100.0% 9.7%
4372560 71.1.1.6 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LppX_LprAFG 0.54 41.0 3.01e-01 86.4% 87.3%
140426 71.1.1.6 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LppX_LprAFG 0.53 41.0 3.00e-01 86.4% 85.7%
4519317 304.56.1.2 ↗ a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.52 37.0 3.46e-01 77.3% 84.7%
3181785 10.32.1.23 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Bac_rhamnosid 0.52 38.0 3.14e-01 81.8% 76.2%
4567570 304.56.1.2 ↗ a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.51 42.0 3.97e-01 97.0% 97.6%
6193 221.1.1.17 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Stap_Strp_tox_C 0.51 36.0 3.12e-01 77.3% 90.3%