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LC168164.1__BAV39396.1__BPT24_279__00275

Bact-Vir

LC168164.1__BAV39396.1__BPT24_279__00275

Identity

Accession:
LC168164 ↗
Kingdom:
phage

Quality

85.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Kungbxnavirus› Tenacibaculum_phage_pT24

TaxID: 1880590

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-65
PDB
Domain cluster: representative
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.83 56.0 6.05e-01 100.0% 85.4%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.80 54.0 5.76e-01 100.0% 80.8%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.77 54.0 5.49e-01 100.0% 74.6%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.76 64.0 5.15e-01 100.0% 49.5%
1d3bC00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.76 64.0 6.02e-01 100.0% 77.5%
1ts9A00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.75 53.0 4.45e-01 100.0% 44.9%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.75 51.0 5.58e-01 100.0% 91.3%
4emhA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.75 64.0 6.38e-01 100.0% 93.3%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 58.0 5.24e-01 100.0% 65.8%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 53.0 5.41e-01 100.0% 84.2%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.70 53.0 5.16e-01 100.0% 73.1%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.69 49.0 4.73e-01 100.0% 66.7%
1wjsA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 49.0 3.89e-01 100.0% 36.2%
4ifdI02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 49.0 3.77e-01 81.4% 64.6%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 46.0 3.97e-01 100.0% 46.9%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.64 46.0 4.59e-01 100.0% 75.0%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 48.0 4.76e-01 100.0% 80.6%
1m1gB03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 47.0 4.68e-01 100.0% 81.0%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 51.0 4.97e-01 100.0% 84.4%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 53.0 5.11e-01 100.0% 83.8%
2rprA00 2.20.25.240 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.60 41.0 3.70e-01 100.0% 49.4%
1yfsA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.60 45.0 3.08e-01 84.7% 43.8%
2rhiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 43.0 3.64e-01 100.0% 44.6%
2ml5A00 3.10.450.410 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 44.0 3.27e-01 83.1% 33.5%
1s3iA02 3.10.25.10 Alpha Beta › Roll › Methionyl-tRNA Fmet Formyltransferase; Chain A, domain 2 › Formyl transferase, C-terminal domain 0.56 43.0 3.70e-01 86.4% 86.3%
7qzqA01 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.55 45.0 2.91e-01 96.6% 59.5%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 39.0 4.06e-01 100.0% 83.6%
1vwxY00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 42.0 3.35e-01 100.0% 39.6%
1twfB04 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.54 48.0 3.40e-01 100.0% 98.3%
3gzrB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 47.0 3.59e-01 100.0% 80.1%
1vq8T00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 41.0 3.37e-01 100.0% 45.4%
3k67A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 44.0 3.26e-01 98.3% 77.6%
3nqzA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 36.0 3.26e-01 93.2% 53.6%
4dapA01 2.40.50.580 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 38.0 3.57e-01 86.4% 93.8%
2fujA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.50 42.0 3.39e-01 94.9% 92.4%
ECOD (73)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5025104 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 54.0 5.82e-01 100.0% 84.0%
4226849 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.77 57.0 5.12e-01 100.0% 57.5%
3270324 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.77 55.0 5.98e-01 100.0% 88.0%
4270910 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.76 59.0 5.54e-01 100.0% 70.0%
552 4.1.1.61 ↗ beta barrels › SH3 › SH3 › SH3 › KapB 0.76 64.0 5.15e-01 100.0% 49.5%
4269844 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.75 54.0 5.09e-01 100.0% 64.3%
4342110 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.74 53.0 5.00e-01 100.0% 61.6%
4554867 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.74 54.0 5.28e-01 100.0% 70.8%
3841414 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.73 56.0 5.35e-01 100.0% 70.0%
4335951 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.73 57.0 5.37e-01 100.0% 69.9%
4140958 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.72 58.0 5.33e-01 100.0% 68.0%
3601070 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 63.0 6.10e-01 100.0% 86.2%
3580428 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 53.0 5.36e-01 81.4% 90.0%
4282868 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 56.0 5.35e-01 100.0% 72.9%
4093911 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 53.0 4.94e-01 100.0% 64.0%
3595833 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.71 61.0 5.18e-01 100.0% 58.9%
4158712 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 51.0 4.87e-01 100.0% 65.7%
490 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.70 53.0 4.99e-01 100.0% 66.2%
4225787 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.70 55.0 4.66e-01 100.0% 51.0%
3709279 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 62.0 5.33e-01 100.0% 63.3%
3616007 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.68 49.0 5.12e-01 100.0% 83.6%
5025169 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 49.0 3.77e-01 78.0% 83.7%
4559371 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 50.0 4.96e-01 100.0% 76.2%
5081091 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 57.0 4.94e-01 100.0% 81.1%
3281945 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.66 54.0 4.70e-01 100.0% 60.0%
4517901 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 59.0 5.00e-01 100.0% 69.5%
4114121 4.1.1.52 ↗ beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.65 57.0 5.12e-01 100.0% 71.2%
5062973 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 47.0 3.72e-01 79.7% 91.5%
4069560 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 54.0 5.02e-01 100.0% 74.7%
4251101 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 55.0 4.86e-01 100.0% 67.1%
5021697 12.5.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related 0.63 51.0 3.82e-01 88.1% 89.0%
5017768 12.5.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related 0.63 50.0 3.77e-01 88.1% 84.0%
5003337 12.5.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related 0.63 50.0 3.67e-01 88.1% 83.1%
3834112 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.62 55.0 4.96e-01 100.0% 86.3%
3313139 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.61 54.0 3.89e-01 100.0% 40.0%
3685207 2.1.1.51 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EXOSC1 0.61 45.0 3.49e-01 81.4% 66.0%
3593783 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 45.0 3.81e-01 81.4% 91.4%
3645395 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.61 55.0 4.94e-01 100.0% 85.0%
3357709 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.60 54.0 4.76e-01 100.0% 70.6%
3805095 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.60 53.0 4.64e-01 100.0% 72.2%
2673679 517.2.1.1 ↗ beta barrels › CBF-like › TraF › TraF › TrbI 0.60 49.0 3.85e-01 94.9% 51.1%
4951885 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 52.0 4.42e-01 100.0% 79.0%
3587906 4.1.1.46 ↗ beta barrels › SH3 › SH3 › SH3 › VEG 0.59 51.0 4.59e-01 100.0% 70.0%
3342793 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.59 53.0 3.71e-01 100.0% 31.1%
4973410 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.59 46.0 3.39e-01 84.7% 75.0%
3459099 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.59 52.0 4.34e-01 100.0% 61.9%
4228570 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 51.0 4.66e-01 100.0% 72.5%
4470741 4.1.1.400 ↗ beta barrels › SH3 › SH3 › SH3 › Spore-coat_CotZ 0.59 51.0 4.17e-01 100.0% 79.1%
4606402 243.1.1.76 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF25976 0.58 51.0 4.07e-01 100.0% 79.2%
4979204 314.1.1.0 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.58 43.0 2.97e-01 86.4% 49.4%
4956725 4041.1.1.1 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.58 51.0 3.57e-01 98.3% 95.1%
4994549 4.1.1.95 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L26 0.58 44.0 3.28e-01 100.0% 30.9%
4977697 4.1.1.95 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L26 0.57 44.0 3.64e-01 100.0% 45.1%
4556349 517.2.1.1 ↗ beta barrels › CBF-like › TraF › TraF › TrbI 0.57 47.0 3.35e-01 100.0% 66.8%
3520308 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 46.0 4.00e-01 100.0% 56.8%
5076536 5.1.2.19 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › DUF4185 0.56 46.0 2.95e-01 94.9% 93.9%
4355043 243.1.1.76 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF25976 0.56 46.0 3.89e-01 96.6% 87.3%
5048425 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 49.0 4.47e-01 100.0% 90.0%
5081103 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.55 41.0 3.25e-01 81.4% 39.2%
3719783 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 48.0 4.12e-01 100.0% 67.0%
3377696 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.53 47.0 3.29e-01 100.0% 35.5%
4601878 4.1.1.295 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, Ribosomal_L26 0.53 41.0 3.32e-01 100.0% 41.5%
150440 881.1.1.1 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.53 40.0 2.96e-01 84.7% 72.1%
3386589 3523.1.1.0 ↗ beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) 0.52 40.0 3.28e-01 88.1% 49.6%
3340031 4.1.1.295 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, Ribosomal_L26 0.52 41.0 3.26e-01 100.0% 40.0%
5028926 4.1.1.95 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L26 0.52 41.0 3.23e-01 100.0% 38.6%
3586559 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 43.0 3.93e-01 98.3% 92.9%
3726905 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 40.0 3.26e-01 88.1% 43.5%
5037204 4.1.1.95 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L26 0.52 40.0 3.35e-01 100.0% 45.0%
3182025 4.1.1.475 ↗ beta barrels › SH3 › SH3 › SH3 › PF26640 0.52 43.0 3.43e-01 100.0% 46.7%
3487003 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 40.0 3.25e-01 100.0% 40.7%
4943161 4.1.1.95 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L26 0.51 41.0 3.29e-01 100.0% 43.1%
4941973 314.1.1.4 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2c 0.50 39.0 2.38e-01 93.2% 47.2%