←Back to structures
LC168164.1__BAV39408.1__BPT24_290__00287
Bact-VirLC168164.1__BAV39408.1__BPT24_290__00287
Identity
- Accession:
- LC168164 ↗
- Kingdom:
- phage
Quality
88.0
mean pLDDT
Taxonomy
TaxID: 1880590
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-101
Domain cluster:
representative
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4e1sA00 | 2.40.160.160 | Mainly Beta › Beta Barrel › Porin › Inverse autotransporter, beta-domain | 0.71 | 47.0 | 3.50e-01 | 76.0% | 27.7% |
| 2fwvA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.70 | 56.0 | 4.47e-01 | 84.0% | 53.7% |
| 4fqeA00 | 2.40.160.40 | Mainly Beta › Beta Barrel › Porin › monomeric porin ompg | 0.70 | 48.0 | 4.02e-01 | 77.0% | 41.2% |
| 1uynX00 | 2.40.128.130 | Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain | 0.67 | 49.0 | 3.52e-01 | 76.0% | 31.5% |
| 3qooA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.65 | 44.0 | 4.01e-01 | 70.0% | 85.8% |
| 2wjqA00 | 2.40.160.40 | Mainly Beta › Beta Barrel › Porin › monomeric porin ompg | 0.64 | 49.0 | 3.85e-01 | 80.0% | 41.0% |
| 2gvhC01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.64 | 44.0 | 3.95e-01 | 70.0% | 83.1% |
| 2cwzA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.63 | 44.0 | 3.96e-01 | 72.0% | 88.3% |
| 2ynkA00 | 2.40.160.130 | Mainly Beta › Beta Barrel › Porin › Capsule assembly protein Wzi | 0.63 | 49.0 | 3.24e-01 | 85.0% | 24.0% |
| 4id2A00 | 2.40.128.510 | Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 | 0.61 | 44.0 | 4.03e-01 | 76.0% | 83.8% |
| 2gvhB02 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.61 | 44.0 | 4.22e-01 | 76.0% | 94.0% |
| 4mtuA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.60 | 44.0 | 3.89e-01 | 77.0% | 88.1% |
| 5egjA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.59 | 47.0 | 3.95e-01 | 84.0% | 88.0% |
| 4z48A00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.59 | 46.0 | 3.45e-01 | 83.0% | 90.0% |
| 1y7uA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.58 | 46.0 | 3.88e-01 | 83.0% | 88.4% |
| 4kz1A00 | 3.10.450.230 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein | 0.58 | 43.0 | 3.92e-01 | 78.0% | 98.5% |
| 1bt9A00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.58 | 43.0 | 3.04e-01 | 80.0% | 28.5% |
| 2cc3A00 | 3.10.450.230 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein | 0.58 | 42.0 | 3.74e-01 | 76.0% | 91.0% |
| 1yqzA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.57 | 43.0 | 4.21e-01 | 88.0% | 73.1% |
| 4fx9A03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.57 | 44.0 | 4.24e-01 | 88.0% | 73.5% |
| 3kd9A02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.56 | 45.0 | 3.39e-01 | 87.0% | 60.2% |
| 2q2bA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.56 | 46.0 | 4.12e-01 | 89.0% | 97.2% |
| 5byuA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.56 | 43.0 | 3.92e-01 | 80.0% | 89.1% |
| 6pfzD02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.56 | 45.0 | 3.37e-01 | 88.0% | 37.4% |
| 2cduA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.55 | 43.0 | 4.18e-01 | 87.0% | 74.3% |
| 3cgbA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.55 | 43.0 | 4.21e-01 | 88.0% | 76.4% |
| 1bh3A00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.55 | 42.0 | 3.02e-01 | 80.0% | 37.7% |
| 1yliB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.55 | 44.0 | 3.81e-01 | 84.0% | 81.1% |
| 1nhpA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.55 | 43.0 | 4.14e-01 | 87.0% | 74.3% |
| 1ar0A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 39.0 | 3.66e-01 | 76.0% | 91.2% |
| 7a0hA02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.54 | 46.0 | 3.92e-01 | 97.0% | 82.8% |
| 3icsA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.54 | 44.0 | 3.28e-01 | 88.0% | 60.5% |
| 1cx8A01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.53 | 46.0 | 3.26e-01 | 95.0% | 86.0% |
| 2w16A03 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.52 | 41.0 | 2.58e-01 | 84.0% | 24.1% |
| 2hhiA01 | 3.30.565.40 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like | 0.51 | 37.0 | 3.52e-01 | 75.0% | 89.0% |
| 3iq2A00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.51 | 38.0 | 3.58e-01 | 79.0% | 96.7% |
| 3f1tB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 38.0 | 3.46e-01 | 80.0% | 91.2% |
| 3r87A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 38.0 | 3.47e-01 | 79.0% | 88.6% |
| 2vqeE01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.50 | 32.0 | 3.79e-01 | 92.0% | 100.0% |
ECOD (48)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3968806 | 5084.5.1.68 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › PF27733 | 0.74 | 55.0 | 4.20e-01 | 77.0% | 39.9% |
| 3946522 | 9.1.1.36 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF3833 | 0.66 | 50.0 | 4.26e-01 | 79.0% | 100.0% |
| 3608121 | 5084.5.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin | 0.65 | 46.0 | 3.33e-01 | 81.0% | 27.3% |
| 142530 | 222.1.1.21 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › FlK | 0.65 | 44.0 | 3.99e-01 | 70.0% | 85.2% |
| 5018057 | 9.13.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like | 0.64 | 47.0 | 4.44e-01 | 80.0% | 62.6% |
| 3666444 | 331.3.1.17 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt | 0.64 | 50.0 | 4.07e-01 | 84.0% | 45.4% |
| 3471233 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.63 | 52.0 | 2.98e-01 | 88.0% | 16.5% |
| 3280323 | 243.1.1.7 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › MecA_N | 0.61 | 43.0 | 4.27e-01 | 73.0% | 93.3% |
| 3786336 | 216.1.1.3 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UEV | 0.61 | 54.0 | 4.59e-01 | 99.0% | 81.8% |
| 3968185 | 5085.1.1.1 ↗ | a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP | 0.60 | 45.0 | 2.92e-01 | 78.0% | 62.7% |
| 3252530 | 5084.5.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin | 0.60 | 44.0 | 3.11e-01 | 76.0% | 25.0% |
| 3385526 | 5084.10.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › LPS-assembly protein LptD › LPS-assembly protein LptD | 0.60 | 45.0 | 2.88e-01 | 80.0% | 21.8% |
| 5038819 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.59 | 39.0 | 2.92e-01 | 70.0% | 27.0% |
| 4336262 | 5084.5.1.11 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 | 0.59 | 45.0 | 3.05e-01 | 81.0% | 35.1% |
| 3596152 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.59 | 48.0 | 3.16e-01 | 91.0% | 40.4% |
| 4926981 | 9.13.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like | 0.59 | 45.0 | 4.22e-01 | 83.0% | 67.2% |
| 4354586 | 222.1.1.1 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydratas | 0.58 | 42.0 | 3.78e-01 | 74.0% | 100.0% |
| 3720183 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.58 | 42.0 | 3.52e-01 | 78.0% | 57.2% |
| 3228525 | 241.15.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain | 0.57 | 50.0 | 4.89e-01 | 99.0% | 93.6% |
| 3204864 | 5.1.11.3 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Utp8_b_propeller | 0.57 | 45.0 | 3.01e-01 | 88.0% | 28.8% |
| 4075485 | 11.1.1.649 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › BPTA | 0.57 | 46.0 | 3.78e-01 | 87.0% | 96.7% |
| 3921641 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 39.0 | 3.63e-01 | 71.0% | 81.6% |
| 4241521 | 5084.5.1.11 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 | 0.56 | 42.0 | 3.02e-01 | 80.0% | 31.0% |
| 5058021 | 330.2.1.0 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) | 0.56 | 41.0 | 4.11e-01 | 99.0% | 74.3% |
| 4025547 | 330.1.1.2 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 | 0.56 | 35.0 | 3.94e-01 | 88.0% | 85.3% |
| 3639264 | 5.1.4.39 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC4_WD40 | 0.56 | 47.0 | 3.03e-01 | 92.0% | 28.6% |
| 3978258 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.55 | 38.0 | 3.99e-01 | 73.0% | 91.4% |
| 3253394 | 79.1.1.0 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain | 0.55 | 46.0 | 3.92e-01 | 92.0% | 80.4% |
| 4978072 | 512.1.1.0 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) | 0.54 | 41.0 | 4.06e-01 | 98.0% | 75.5% |
| 3994209 | 2011.1.1.8 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 | 0.53 | 47.0 | 3.33e-01 | 99.0% | 86.8% |
| 3415714 | 79.1.1.23 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Chitin_bind_4 | 0.53 | 34.0 | 3.85e-01 | 79.0% | 86.7% |
| 3241023 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.52 | 41.0 | 2.67e-01 | 86.0% | 89.3% |
| 3400513 | 77.1.1.4 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Chitin_bind_4 | 0.52 | 31.0 | 3.45e-01 | 71.0% | 73.1% |
| 4025861 | 4051.1.1.1 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B | 0.52 | 44.0 | 3.74e-01 | 94.0% | 75.3% |
| 4886524 | 3274.1.1.1 ↗ | extended segments › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › Ribosomal_S5 | 0.52 | 33.0 | 3.83e-01 | 91.0% | 96.9% |
| 4171258 | 330.1.1.2 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 | 0.52 | 34.0 | 3.75e-01 | 94.0% | 86.7% |
| 3595183 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.52 | 33.0 | 3.65e-01 | 89.0% | 84.0% |
| 4003790 | 330.1.1.2 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 | 0.52 | 38.0 | 3.74e-01 | 94.0% | 73.3% |
| 5040200 | 330.1.1.2 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 | 0.51 | 33.0 | 3.59e-01 | 91.0% | 80.0% |
| 3601210 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.51 | 44.0 | 3.05e-01 | 98.0% | 74.1% |
| 4023930 | 330.1.1.2 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 | 0.51 | 35.0 | 3.84e-01 | 96.0% | 90.0% |
| 3297534 | 330.1.1.2 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 | 0.51 | 35.0 | 3.03e-01 | 99.0% | 43.0% |
| 3966293 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.51 | 34.0 | 3.74e-01 | 92.0% | 90.7% |
| 4017102 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.51 | 42.0 | 3.99e-01 | 94.0% | 89.6% |
| 3680278 | 222.1.1.4 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT | 0.51 | 41.0 | 3.53e-01 | 88.0% | 73.6% |
| 4254696 | 330.1.1.2 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 | 0.51 | 33.0 | 3.72e-01 | 95.0% | 89.3% |
| 4347716 | 3274.1.1.1 ↗ | extended segments › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › Ribosomal_S5 | 0.50 | 32.0 | 3.34e-01 | 91.0% | 67.4% |
| 3408388 | 4.1.1.326 ↗ | beta barrels › SH3 › SH3 › SH3 › Chitin_bind_4 | 0.50 | 31.0 | 3.33e-01 | 74.0% | 73.8% |