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BBC20948.1
Arc-VirLC208019__BBC20948.1__X__00022
Identity
- Accession:
- LC208019 ↗
- Protein ID:
- BBC20948.1 ↗
- Kingdom:
- archaea
Quality
86.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-118
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3pvlA04 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.60 | 33.0 | 3.53e-01 | 94.7% | 59.6% |
| 1e8oD00 | 3.30.720.10 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 | 0.57 | 33.0 | 3.94e-01 | 71.9% | 85.5% |
| 3g1jA00 | 2.30.30.350 | Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. | 0.57 | 40.0 | 4.37e-01 | 90.4% | 91.1% |
| 2ci8A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.54 | 25.0 | 3.64e-01 | 76.3% | 94.6% |
| 1vq8Q00 | 2.30.30.70 | Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 | 0.53 | 29.0 | 3.15e-01 | 85.1% | 62.1% |
| 1e8oA00 | 3.30.720.10 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 | 0.53 | 31.0 | 3.66e-01 | 71.9% | 87.8% |
| 2dmyA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.50 | 30.0 | 3.28e-01 | 72.8% | 70.1% |
| 2zdiB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.50 | 37.0 | 3.83e-01 | 85.1% | 81.1% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3603731 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.82 | 48.0 | 4.44e-01 | 100.0% | 47.9% |
| 5017154 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.79 | 46.0 | 4.38e-01 | 99.1% | 49.6% |
| 4963795 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 43.0 | 5.19e-01 | 86.0% | 100.0% |
| 3260099 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 31.0 | 3.43e-01 | 71.1% | 53.3% |
| 3978756 | 3197.1.1.1 ↗ | a+b two layers › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 › PipB2_N | 0.60 | 35.0 | 3.46e-01 | 92.1% | 52.5% |
| 3984091 | 3180.1.1.1 ↗ | a+b two layers › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › EspG | 0.59 | 33.0 | 3.46e-01 | 82.5% | 58.1% |
| 3787551 | 223.2.1.17 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › SLM4 | 0.57 | 34.0 | 2.97e-01 | 96.5% | 40.0% |
| 3933919 | 220.1.1.176 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7778 | 0.56 | 37.0 | 3.50e-01 | 72.8% | 55.6% |
| 4543273 | 304.36.1.1 ↗ | a+b two layers › Alpha-beta plaits › YajQ-like › YajQ-like › DUF520 | 0.56 | 29.0 | 3.70e-01 | 80.7% | 87.7% |
| 3302818 | 4.1.1.236 ↗ | beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 | 0.55 | 26.0 | 3.37e-01 | 85.1% | 85.5% |
| 3893533 | 4292.2.1.0 ↗ | a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain | 0.55 | 40.0 | 4.22e-01 | 85.1% | 86.0% |
| 4946972 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 29.0 | 3.25e-01 | 85.1% | 65.6% |
| 3931122 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 34.0 | 3.69e-01 | 71.1% | 76.8% |
| 3675857 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.53 | 35.0 | 2.98e-01 | 96.5% | 40.0% |
| 3239418 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 40.0 | 3.16e-01 | 78.9% | 80.4% |
| 3930986 | 4292.2.1.0 ↗ | a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain | 0.53 | 38.0 | 3.98e-01 | 90.4% | 81.0% |
| 4027686 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.52 | 26.0 | 3.63e-01 | 87.7% | 100.0% |
| 3922443 | 11.1.1.549 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TMEM132D_N | 0.51 | 29.0 | 3.28e-01 | 85.1% | 73.8% |
| 5022351 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.51 | 31.0 | 2.60e-01 | 71.1% | 35.4% |
| 3451565 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.51 | 32.0 | 3.06e-01 | 91.2% | 49.3% |
| 3797447 | 896.1.1.0 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related | 0.51 | 35.0 | 3.86e-01 | 71.9% | 88.4% |
| 3217379 | 896.1.1.2 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP14 | 0.51 | 36.0 | 3.89e-01 | 72.8% | 88.4% |