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LC371242.1__BBC78181.1__X__00133
Bact-VirLC371242.1__BBC78181.1__X__00133
Identity
- Accession:
- LC371242 ↗
- Kingdom:
- phage
Quality
89.0
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Straboviridae›
Kagamiyamavirus›
Escherichia_phage_EcS1
TaxID: 2083276
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 47-103
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF26834.1 best | Phage_T4_Y06J | 76.6 | 1.90e-21 | 100.0% | 51.8% |
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ckkA02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.74 | 60.0 | 6.08e-01 | 100.0% | 89.5% |
| 4ytlA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.74 | 55.0 | 5.80e-01 | 100.0% | 90.0% |
| 2do3A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.73 | 53.0 | 5.62e-01 | 100.0% | 88.2% |
| 2e70A00 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.73 | 53.0 | 4.98e-01 | 100.0% | 63.4% |
| 3p8bB02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.72 | 57.0 | 5.58e-01 | 100.0% | 79.0% |
| 2e6zA00 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 53.0 | 5.25e-01 | 100.0% | 81.4% |
| 3pvlA05 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.68 | 60.0 | 5.49e-01 | 100.0% | 78.9% |
| 1vwxM01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 52.0 | 4.56e-01 | 100.0% | 55.3% |
| 6c6sD02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 50.0 | 4.98e-01 | 100.0% | 81.7% |
| 7k9cA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 50.0 | 4.44e-01 | 100.0% | 57.0% |
| 3j7aF03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 50.0 | 4.72e-01 | 100.0% | 69.0% |
| 1m1gB03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 49.0 | 4.75e-01 | 100.0% | 77.8% |
| 5zr6A02 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.62 | 52.0 | 4.81e-01 | 98.2% | 88.2% |
| 3be3A00 | 2.30.30.320 | Mainly Beta › Roll › SH3 type barrels. › DUF1653-like domain | 0.61 | 54.0 | 4.93e-01 | 100.0% | 84.2% |
| 2v1rA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.59 | 52.0 | 5.01e-01 | 100.0% | 92.5% |
| 3pieB05 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 48.0 | 4.72e-01 | 98.2% | 84.4% |
| 1amiA04 | 3.20.19.10 | Alpha Beta › Alpha-Beta Barrel › Aconitase; domain 4 › Aconitase, domain 4 | 0.59 | 45.0 | 3.05e-01 | 84.2% | 80.1% |
| 1vq8T00 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 48.0 | 3.75e-01 | 100.0% | 44.5% |
| 5tkwA01 | 3.30.420.380 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.55 | 36.0 | 2.66e-01 | 100.0% | 22.9% |
| 2fhdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 45.0 | 4.43e-01 | 100.0% | 85.5% |
| 2kcdA00 | 3.10.450.250 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › S. aureus uracil DNA glycosylase inhibitor | 0.54 | 42.0 | 3.33e-01 | 86.0% | 53.3% |
| 7bspA01 | 2.70.150.10 | Mainly Beta › Distorted Sandwich › Calcium-transporting ATPase, cytoplasmic transduction domain A › Calcium-transporting ATPase, cytoplasmic transduction domain A | 0.54 | 44.0 | 3.37e-01 | 96.5% | 78.3% |
| 1ms9A01 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.52 | 41.0 | 2.56e-01 | 91.2% | 33.3% |
| 1wruA01 | 2.30.300.10 | Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold | 0.52 | 42.0 | 3.07e-01 | 94.7% | 41.7% |
| 3c96A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 40.0 | 3.02e-01 | 93.0% | 48.2% |
| 2eyqA05 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.51 | 40.0 | 4.01e-01 | 100.0% | 89.8% |
| 2gu1A01 | 3.10.450.350 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 38.0 | 3.39e-01 | 84.2% | 89.8% |
| 5itqA01 | 3.20.190.10 | Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal | 0.50 | 42.0 | 3.32e-01 | 100.0% | 69.7% |
ECOD (82)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4121981 | 4.1.1.325 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW, KOW2_Spt5 | 0.77 | 60.0 | 4.62e-01 | 100.0% | 38.4% |
| 4372288 | 4.1.1.238 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 | 0.75 | 55.0 | 5.49e-01 | 100.0% | 75.0% |
| 3486328 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.75 | 55.0 | 5.48e-01 | 100.0% | 75.0% |
| 3660923 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.75 | 55.0 | 5.17e-01 | 100.0% | 64.3% |
| 3651961 | 4.1.1.251 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5 | 0.74 | 55.0 | 5.59e-01 | 100.0% | 81.8% |
| 4029093 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 55.0 | 3.97e-01 | 100.0% | 29.0% |
| 3684908 | 4.1.1.238 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 | 0.74 | 55.0 | 4.99e-01 | 100.0% | 60.0% |
| 4660107 | 4.1.1.238 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 | 0.74 | 54.0 | 5.39e-01 | 100.0% | 75.0% |
| 3751502 | 4.1.1.365 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_KIN17_C | 0.74 | 60.0 | 5.61e-01 | 100.0% | 72.9% |
| 3924379 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 55.0 | 5.35e-01 | 100.0% | 73.0% |
| 3222146 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.73 | 56.0 | 5.38e-01 | 100.0% | 72.3% |
| 3302817 | 4.1.1.362 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW6_SPT51-2, KOW7_SPT5 | 0.73 | 53.0 | 4.33e-01 | 100.0% | 41.3% |
| 3710582 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 59.0 | 4.72e-01 | 100.0% | 46.7% |
| 3264809 | 4.1.1.251 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5 | 0.73 | 54.0 | 5.56e-01 | 100.0% | 83.6% |
| 3821919 | 4.1.1.238 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 | 0.72 | 51.0 | 5.08e-01 | 100.0% | 71.7% |
| 4024914 | 4.1.1.249 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 | 0.72 | 52.0 | 5.16e-01 | 98.2% | 73.3% |
| 3237859 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 55.0 | 5.59e-01 | 100.0% | 85.5% |
| 3486495 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 55.0 | 3.84e-01 | 100.0% | 26.9% |
| 3671986 | 4.1.1.238 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 | 0.71 | 52.0 | 4.91e-01 | 100.0% | 64.3% |
| 3619215 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 54.0 | 4.48e-01 | 100.0% | 47.0% |
| 3756428 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.71 | 54.0 | 4.47e-01 | 100.0% | 47.0% |
| 3555930 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.71 | 54.0 | 5.03e-01 | 100.0% | 67.1% |
| 4002679 | 4.1.1.322 ↗ | beta barrels › SH3 › SH3 › SH3 › GPKOW_C | 0.70 | 54.0 | 4.21e-01 | 100.0% | 39.2% |
| 5000308 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.70 | 53.0 | 5.64e-01 | 100.0% | 93.9% |
| 5057234 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 51.0 | 4.77e-01 | 100.0% | 62.9% |
| 3256431 | 4.1.1.360 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW, G-patch_2 | 0.70 | 51.0 | 4.55e-01 | 98.2% | 55.0% |
| 3820065 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 53.0 | 5.44e-01 | 100.0% | 85.5% |
| 4984882 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.70 | 55.0 | 5.19e-01 | 100.0% | 70.0% |
| 4101502 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.70 | 53.0 | 5.46e-01 | 100.0% | 87.0% |
| 5042892 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.70 | 55.0 | 5.48e-01 | 100.0% | 81.7% |
| 4112177 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.70 | 55.0 | 5.28e-01 | 100.0% | 75.4% |
| 4261791 | 4.1.1.24 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L14e | 0.69 | 53.0 | 3.92e-01 | 100.0% | 32.4% |
| 3486496 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 52.0 | 5.27e-01 | 100.0% | 83.6% |
| 3807668 | 387.1.1.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related | 0.69 | 44.0 | 4.79e-01 | 71.9% | 82.2% |
| 5036498 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.69 | 53.0 | 4.86e-01 | 100.0% | 64.0% |
| 3440094 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.69 | 54.0 | 5.37e-01 | 100.0% | 81.7% |
| 3274582 | 4.1.1.365 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_KIN17_C | 0.69 | 52.0 | 5.30e-01 | 100.0% | 85.5% |
| 3612090 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 56.0 | 5.55e-01 | 100.0% | 85.0% |
| 4956443 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 55.0 | 5.41e-01 | 100.0% | 83.3% |
| 4995677 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 52.0 | 5.30e-01 | 100.0% | 85.5% |
| 3256432 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 55.0 | 5.42e-01 | 100.0% | 83.3% |
| 3300226 | 4.1.1.140 ↗ | beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom | 0.68 | 61.0 | 5.44e-01 | 100.0% | 90.0% |
| 3476178 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 50.0 | 3.98e-01 | 100.0% | 38.3% |
| 3486329 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 52.0 | 5.05e-01 | 100.0% | 73.8% |
| 3598499 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 55.0 | 4.11e-01 | 100.0% | 36.4% |
| 4059465 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.67 | 53.0 | 5.01e-01 | 100.0% | 72.1% |
| 3519125 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 49.0 | 5.19e-01 | 100.0% | 90.0% |
| 4203592 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 53.0 | 5.14e-01 | 100.0% | 76.9% |
| 3358753 | 4.1.1.381 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5, KOW4_SPT5 | 0.67 | 52.0 | 3.73e-01 | 100.0% | 29.1% |
| 3598283 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 54.0 | 4.15e-01 | 100.0% | 39.2% |
| 4932609 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 52.0 | 5.00e-01 | 100.0% | 75.4% |
| 4200330 | 4.1.1.249 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 | 0.65 | 48.0 | 3.85e-01 | 100.0% | 37.6% |
| 4971532 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 52.0 | 4.85e-01 | 100.0% | 71.4% |
| 4027263 | 4.1.1.104 ↗ | beta barrels › SH3 › SH3 › SH3 › KN17_SH3 | 0.64 | 53.0 | 4.19e-01 | 100.0% | 43.3% |
| 3885049 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.64 | 51.0 | 5.17e-01 | 100.0% | 90.9% |
| 4629735 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 51.0 | 4.94e-01 | 100.0% | 76.9% |
| 4943273 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 51.0 | 4.95e-01 | 100.0% | 76.9% |
| 3936038 | 220.1.1.14 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom | 0.64 | 57.0 | 4.54e-01 | 100.0% | 74.3% |
| 4644007 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.63 | 49.0 | 4.91e-01 | 100.0% | 83.1% |
| 4467360 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 49.0 | 4.84e-01 | 100.0% | 81.7% |
| 3514522 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.62 | 55.0 | 5.05e-01 | 100.0% | 86.7% |
| 4215717 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 50.0 | 4.71e-01 | 100.0% | 75.4% |
| 3287628 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 54.0 | 5.21e-01 | 100.0% | 92.2% |
| 331968 | 4.1.1.55 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF1653 | 0.60 | 54.0 | 4.87e-01 | 100.0% | 82.1% |
| 3302816 | 4.1.1.235 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW1_SPT5 | 0.59 | 52.0 | 4.01e-01 | 100.0% | 83.8% |
| 1421013 | 4.1.1.22 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L27e | 0.59 | 51.0 | 3.92e-01 | 100.0% | 52.9% |
| 3518287 | 4.1.1.347 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 | 0.59 | 50.0 | 4.09e-01 | 100.0% | 50.4% |
| 3488000 | 4.1.1.22 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L27e | 0.59 | 51.0 | 3.89e-01 | 100.0% | 51.7% |
| 3597659 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 51.0 | 3.95e-01 | 100.0% | 55.2% |
| 3714873 | 4.1.1.4 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW,Ribosomal_L27e | 0.59 | 51.0 | 3.81e-01 | 100.0% | 49.3% |
| 3504709 | 4.1.1.4 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW,Ribosomal_L27e | 0.58 | 50.0 | 3.89e-01 | 100.0% | 54.8% |
| 3194390 | 4.1.1.108 ↗ | beta barrels › SH3 › SH3 › SH3 › XRN1_D2_D3 | 0.58 | 49.0 | 4.11e-01 | 100.0% | 85.7% |
| 3409335 | 4.1.1.103 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_12 | 0.57 | 49.0 | 3.47e-01 | 100.0% | 46.2% |
| 4946307 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 41.0 | 3.16e-01 | 80.7% | 60.0% |
| 5031165 | 4.1.1.93 ↗ | beta barrels › SH3 › SH3 › SH3 › 40S_S4_C | 0.56 | 45.0 | 4.28e-01 | 100.0% | 74.3% |
| 4181687 | 4.1.1.7 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 | 0.55 | 49.0 | 4.04e-01 | 100.0% | 61.2% |
| 4263339 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.55 | 49.0 | 4.40e-01 | 100.0% | 72.5% |
| 4171942 | 4.1.1.178 ↗ | beta barrels › SH3 › SH3 › SH3 › ribosomal_L24 | 0.55 | 49.0 | 4.02e-01 | 100.0% | 64.4% |
| 4505258 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 43.0 | 3.38e-01 | 87.7% | 58.3% |
| 3299426 | 5.1.3.152 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Str_synth, SSL_N | 0.52 | 45.0 | 2.82e-01 | 94.7% | 31.3% |
| 3866981 | 9.3.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like | 0.52 | 42.0 | 3.74e-01 | 94.7% | 93.3% |
| 4514734 | 1.1.13.42 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Tail_tube | 0.51 | 42.0 | 3.52e-01 | 96.5% | 83.6% |