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LC373201.2__BBD52262.1__X__00165

Bact-Vir

LC373201.2__BBD52262.1__X__00165

Identity

Accession:
LC373201 ↗
Kingdom:
phage

Quality

71.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Ackermannviridae› Agtrevirus› Enterobacter_phage_EspM4VN

TaxID: 2137745

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-82
PDB
Domain cluster: rep: NC_028925.1__YP_009209878.1__AVV67_gp136__00136__D3-63
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2mdrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.73 55.0 5.18e-01 78.8% 81.9%
3c4bA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.68 49.0 5.20e-01 76.2% 100.0%
1x47A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.66 51.0 4.94e-01 81.2% 90.8%
1gqyB02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.65 48.0 3.60e-01 80.0% 84.3%
1vw4502 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 51.0 4.90e-01 97.5% 97.8%
4qxaB00 2.30.29.230 Mainly Beta › Roll › PH-domain like › 0.57 37.0 3.02e-01 85.0% 35.4%
3flpA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 47.0 3.58e-01 98.8% 88.5%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.55 35.0 3.72e-01 83.7% 73.2%
3g7pA00 1.10.3100.20 Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Protein of unknown function DUF269 0.54 39.0 3.30e-01 77.5% 93.8%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.53 38.0 4.05e-01 73.8% 95.5%
1ylxA00 3.30.70.1480 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like 0.53 37.0 3.51e-01 73.8% 89.9%
5jk0B01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.52 41.0 3.26e-01 86.3% 91.9%
1uwyA02 2.60.40.1120 Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain 0.52 37.0 3.47e-01 73.8% 84.5%
4ns4A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 44.0 3.07e-01 95.0% 93.4%
2hjjA00 3.30.160.130 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › ykff protein like domains 0.52 35.0 3.81e-01 75.0% 87.9%
1x6oA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 35.0 3.60e-01 71.2% 79.7%
3lmlA03 2.60.40.4290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 35.0 3.46e-01 71.2% 68.2%
3hxlA02 2.60.40.4290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 35.0 3.39e-01 71.2% 64.4%
3jr7A03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.51 38.0 3.42e-01 83.7% 80.5%
3bwsA01 2.60.40.3070 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 36.0 3.59e-01 75.0% 92.9%
2l73A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.51 39.0 3.26e-01 83.7% 68.5%
4mdaA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.50 38.0 2.95e-01 85.0% 46.0%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3370322 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.73 55.0 5.28e-01 80.0% 84.4%
3502939 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.71 52.0 5.05e-01 78.8% 84.4%
3710326 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.69 51.0 5.09e-01 80.0% 95.3%
3678841 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.69 51.0 5.08e-01 80.0% 85.9%
3748189 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.69 51.0 5.17e-01 80.0% 93.8%
3728854 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.68 46.0 5.07e-01 70.0% 95.4%
4487255 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.68 51.0 5.23e-01 80.0% 98.7%
3931156 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.68 48.0 5.08e-01 75.0% 100.0%
3788141 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.67 48.0 4.94e-01 75.0% 88.0%
1168794 330.1.1.8 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dicer_dsRBD 0.67 49.0 4.64e-01 77.5% 74.7%
4076949 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.67 48.0 5.04e-01 75.0% 98.6%
3273505 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.66 48.0 4.84e-01 76.2% 93.8%
3487251 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.66 48.0 4.88e-01 78.8% 86.3%
4628696 2004.1.1.159 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.65 49.0 3.59e-01 80.0% 82.7%
3617638 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.65 48.0 4.46e-01 80.0% 72.4%
3782338 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.65 46.0 4.43e-01 75.0% 75.3%
3408936 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.64 47.0 4.53e-01 77.5% 71.1%
3554081 330.1.1.8 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dicer_dsRBD 0.63 45.0 4.90e-01 73.8% 93.8%
3276895 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 44.0 2.79e-01 72.5% 21.5%
4376478 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.62 44.0 4.25e-01 73.8% 77.8%
5075465 4325.1.1.0 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.62 41.0 4.66e-01 81.2% 91.7%
3811901 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.61 43.0 4.64e-01 75.0% 100.0%
3319893 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.60 52.0 4.86e-01 100.0% 89.0%
3611339 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.59 47.0 4.62e-01 87.5% 94.1%
3927599 2007.1.13.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Lumazine synthase 0.59 43.0 3.58e-01 77.5% 78.6%
3166679 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 41.0 2.67e-01 73.8% 98.9%
3846927 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.58 49.0 4.70e-01 93.8% 81.1%
4944430 244.3.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.58 43.0 4.35e-01 87.5% 78.8%
3501861 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.58 50.0 4.61e-01 98.8% 78.1%
4048167 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.58 46.0 4.84e-01 93.8% 100.0%
4985600 896.1.1.0 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.57 35.0 3.56e-01 85.0% 62.5%
3791940 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 41.0 3.80e-01 80.0% 60.0%
5074419 512.1.1.1 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.56 39.0 4.23e-01 75.0% 96.9%
3573862 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 39.0 2.88e-01 80.0% 27.6%
5006851 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.54 38.0 3.92e-01 76.2% 89.2%
3624043 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 39.0 2.99e-01 80.0% 32.6%
3739384 4075.1.1.2 ↗ a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 0.51 35.0 3.35e-01 71.2% 71.7%
3302307 12.1.1.87 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › SWIM 0.51 42.0 3.87e-01 92.5% 75.2%