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LC483177.1__BBK09125.1__X__00011
Bact-VirLC483177.1__BBK09125.1__X__00011
Identity
- Accession:
- LC483177 ↗
- Kingdom:
- phage
Quality
77.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-29
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5efrA01 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.69 | 49.0 | 3.78e-01 | 100.0% | 29.6% |
| 1nltA02 | 2.10.230.10 | Mainly Beta › Ribbon › Chaperone, DNAj Protein; Chain A › Heat shock protein DnaJ, cysteine-rich domain | 0.61 | 51.0 | 4.06e-01 | 100.0% | 68.2% |
| 1fs0G01 | 3.40.1380.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit | 0.61 | 44.0 | 3.11e-01 | 100.0% | 91.5% |
| 4rudA00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.60 | 42.0 | 3.66e-01 | 86.2% | 69.0% |
| 1qlbA04 | 3.10.20.820 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.60 | 44.0 | 3.28e-01 | 93.1% | 28.7% |
| 5ighA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.60 | 44.0 | 3.26e-01 | 82.8% | 27.3% |
| 3iayA03 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.59 | 44.0 | 2.74e-01 | 100.0% | 34.7% |
| 5mqcC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 42.0 | 2.62e-01 | 96.6% | 21.2% |
| 2uv8A04 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.57 | 42.0 | 2.35e-01 | 93.1% | 5.6% |
| 2j3vA02 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.57 | 38.0 | 2.48e-01 | 89.7% | 41.0% |
| 1hkvA01 | 2.40.37.10 | Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 | 0.56 | 44.0 | 2.88e-01 | 96.6% | 21.6% |
| 6em3x01 | 3.40.50.10480 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Brix domain | 0.55 | 37.0 | 2.50e-01 | 93.1% | 45.9% |
| 3gw6D02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 43.0 | 2.75e-01 | 75.9% | 13.7% |
| 1c4zA02 | 3.30.2160.10 | Alpha Beta › 2-Layer Sandwich › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain | 0.55 | 38.0 | 2.95e-01 | 75.9% | 42.0% |
| 6syyA01 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.53 | 35.0 | 2.49e-01 | 89.7% | 21.7% |
| 1ihjA00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.51 | 34.0 | 2.82e-01 | 100.0% | 31.9% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3249830 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.75 | 61.0 | 4.08e-01 | 100.0% | 25.6% |
| 5066196 | 3010.1.1.0 ↗ | a/b three-layered sandwiches › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains | 0.74 | 62.0 | 4.35e-01 | 100.0% | 51.5% |
| 4016275 | 109.4.1.2191 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT, TPR_14, TPR_19, HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N, HAT_PRP39_N, HAT_PRP39_C | 0.67 | 48.0 | 2.64e-01 | 100.0% | 4.7% |
| 4017413 | 102.1.1.20 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › IGR | 0.67 | 50.0 | 3.17e-01 | 100.0% | 51.1% |
| 4647653 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.67 | 49.0 | 2.75e-01 | 89.7% | 17.4% |
| 3358123 | 109.3.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank | 0.66 | 53.0 | 3.63e-01 | 100.0% | 40.0% |
| 4552869 | 2004.1.1.2 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.65 | 47.0 | 2.97e-01 | 100.0% | 15.0% |
| 3384797 | 361.1.1.0 ↗ | few secondary structure elements › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain | 0.65 | 51.0 | 4.78e-01 | 100.0% | 92.5% |
| 3455390 | 207.1.1.55 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_8 | 0.64 | 45.0 | 2.54e-01 | 96.6% | 5.9% |
| 4029705 | 256.1.1.0 ↗ | a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like | 0.62 | 47.0 | 4.01e-01 | 89.7% | 41.7% |
| 3958234 | 872.3.1.0 ↗ | a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like | 0.61 | 42.0 | 3.44e-01 | 79.3% | 32.9% |
| 4656578 | 812.1.1.1 ↗ | a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain › MinE | 0.61 | 44.0 | 3.95e-01 | 82.8% | 50.0% |
| 3256918 | 601.19.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein | 0.60 | 48.0 | 2.66e-01 | 96.6% | 6.3% |
| 4954828 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.60 | 42.0 | 3.88e-01 | 82.8% | 48.0% |
| 5030312 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.58 | 41.0 | 3.71e-01 | 82.8% | 45.5% |
| 3967728 | 274.1.1.34 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › DUF4845 | 0.57 | 39.0 | 2.92e-01 | 96.6% | 24.3% |
| 3230925 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.57 | 39.0 | 2.74e-01 | 82.8% | 22.3% |
| 4989263 | 205.1.1.17 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_11 | 0.57 | 41.0 | 2.67e-01 | 93.1% | 51.1% |
| 3368991 | 207.1.1.55 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_8 | 0.56 | 41.0 | 2.32e-01 | 93.1% | 6.3% |
| 4199985 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.56 | 41.0 | 2.46e-01 | 86.2% | 8.1% |
| 4878135 | 5084.5.3.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel | 0.55 | 38.0 | 2.13e-01 | 100.0% | 4.9% |
| 3267959 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 35.0 | 2.94e-01 | 86.2% | 28.2% |
| 4013760 | 4015.1.1.1 ↗ | alpha complex topology › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › Sec1 | 0.52 | 36.0 | 2.26e-01 | 86.2% | 9.6% |
| 3401203 | 59.1.3.0 ↗ | beta complex topology › triple barrel › triple barrel › RNA polymerase I subunits A49/A34.5 dimerization domains | 0.51 | 40.0 | 3.12e-01 | 89.7% | 30.6% |