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LC483177.1__BBK09138.1__X__00024

Bact-Vir

LC483177.1__BBK09138.1__X__00024

Identity

Accession:
LC483177 ↗
Kingdom:
phage

Quality

95.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-56
PDB
Domain cluster: representative
CATH (57)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cofA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.78 59.0 4.72e-01 81.8% 48.6%
3fm8D03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.74 59.0 4.74e-01 87.3% 53.7%
4nswA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.74 56.0 4.53e-01 83.6% 46.8%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.73 50.0 4.33e-01 72.7% 52.9%
1ylxA00 3.30.70.1480 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like 0.72 56.0 4.65e-01 85.5% 58.6%
5vmzA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.72 49.0 5.55e-01 89.1% 100.0%
4h63Q04 3.90.1150.120 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.70 58.0 4.59e-01 94.5% 46.6%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.68 58.0 4.10e-01 100.0% 30.9%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.67 44.0 3.29e-01 81.8% 27.0%
2cwsA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.66 58.0 3.85e-01 100.0% 39.2%
5mc9A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.66 58.0 4.02e-01 100.0% 48.4%
4h0aA00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.65 56.0 3.58e-01 100.0% 57.2%
2gumB03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.65 49.0 3.81e-01 81.8% 87.6%
3nuhB02 3.30.300.370 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.64 52.0 4.05e-01 90.9% 67.8%
3fy6A01 3.30.2210.10 Alpha Beta › 2-Layer Sandwich › Integron cassette protein fold › Integron cassette protein superfamily 0.64 52.0 4.32e-01 96.4% 57.9%
5gaeG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.63 50.0 4.42e-01 87.3% 90.1%
4a17E01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.63 50.0 4.37e-01 89.1% 89.4%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.63 51.0 4.26e-01 92.7% 81.0%
5yjlC02 3.20.180.10 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like 0.62 55.0 4.38e-01 100.0% 76.6%
1jyoA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.62 55.0 4.18e-01 100.0% 77.7%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 51.0 4.88e-01 96.4% 97.0%
1e8oD00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.62 45.0 4.12e-01 80.0% 67.1%
2fm8B00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.62 52.0 4.07e-01 98.2% 80.0%
4qa8A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.61 47.0 3.20e-01 85.5% 80.0%
3tu3A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.60 53.0 4.14e-01 100.0% 66.4%
1vr8A00 3.40.1000.20 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › TM1622-like 0.60 52.0 3.92e-01 98.2% 41.5%
6hgcA01 3.40.532.10 Alpha Beta › 3-Layer(aba) Sandwich › Ubiquitin C-terminal Hydrolase UCH-l3 › Peptidase C12, ubiquitin carboxyl-terminal hydrolase 0.60 48.0 3.43e-01 94.5% 79.1%
6v55A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 51.0 3.59e-01 100.0% 44.6%
2pmlX01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 41.0 3.20e-01 72.7% 73.4%
1h30A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 49.0 3.38e-01 96.4% 86.1%
1cruA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.59 49.0 2.97e-01 100.0% 29.9%
1k3sA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.59 50.0 4.10e-01 100.0% 85.2%
3dsmA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 47.0 2.98e-01 92.7% 24.8%
3lovA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 51.0 3.75e-01 100.0% 93.4%
1vx7H01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.57 51.0 4.32e-01 96.4% 72.9%
5cvmA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.57 50.0 3.14e-01 100.0% 32.8%
1k0eB00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.56 47.0 2.85e-01 98.2% 31.2%
3bwsA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 43.0 2.77e-01 90.9% 26.3%
3ei3A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 48.0 2.97e-01 98.2% 22.9%
4nsxA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 48.0 3.01e-01 98.2% 22.9%
2bolB02 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 45.0 3.53e-01 92.7% 70.3%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.56 46.0 2.99e-01 100.0% 30.5%
5xbfA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 42.0 3.61e-01 81.8% 51.1%
1orvA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.56 45.0 2.72e-01 98.2% 13.6%
3gd0A02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.55 43.0 3.53e-01 87.3% 58.9%
2gcjA01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.55 43.0 3.34e-01 87.3% 57.5%
3d6wB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 38.0 3.58e-01 74.5% 72.9%
3igfA02 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 41.0 3.72e-01 81.8% 59.5%
3ml4A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 40.0 3.35e-01 80.0% 49.0%
2kumA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 38.0 3.87e-01 80.0% 87.7%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.54 46.0 4.08e-01 96.4% 88.7%
2fmlA02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.54 43.0 3.07e-01 80.0% 82.9%
2dy1A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 42.0 2.83e-01 98.2% 49.8%
4pqdA00 3.90.570.10 Alpha Beta › Alpha-Beta Complex › Sugar Binding Protein, Amyloid A4 Protein; Chain A › Amyloidogenic glycoprotein, heparin-binding domain 0.53 37.0 3.20e-01 80.0% 54.3%
4cbvA02 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.51 35.0 2.95e-01 76.4% 57.6%
2g3wA00 3.10.640.10 Alpha Beta › Roll › Restriction endonuclease-like alpha-beta roll fold › Restriction endonuclease-like alpha-beta roll domain 0.51 39.0 2.81e-01 100.0% 26.8%
3bs1A00 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.51 36.0 3.09e-01 78.2% 62.1%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3235669 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.77 57.0 4.34e-01 80.0% 50.4%
5003371 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.75 59.0 5.14e-01 87.3% 57.6%
3436173 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.75 58.0 3.57e-01 90.9% 14.7%
4965206 4221.1.1.3 a+b two layers › YkuJ-like › YkuJ-like › YkuJ-like › PF26008 0.74 61.0 5.67e-01 92.7% 72.9%
3211176 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.72 54.0 3.49e-01 81.8% 25.5%
4996016 4237.1.1.1 beta barrels › FomD-like › FomD-like › FomD-like › DUF402 0.72 50.0 3.57e-01 72.7% 38.1%
4020676 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.72 51.0 3.46e-01 76.4% 21.0%
3890750 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.72 52.0 4.46e-01 78.2% 50.0%
4301684 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.70 54.0 3.75e-01 85.5% 25.1%
3222321 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.70 53.0 3.41e-01 81.8% 18.0%
3468148 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.69 53.0 3.66e-01 89.1% 23.6%
3928299 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.69 62.0 4.31e-01 100.0% 51.8%
4971601 241.14.1.0 a+b two layers › Type III secretory system chaperone-like › SARS-unique domain-C › SARS-unique domain-C 0.68 54.0 5.10e-01 90.9% 72.9%
3225057 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.68 54.0 3.72e-01 89.1% 25.9%
3608754 10.1.1.56 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › TS_C 0.66 57.0 3.82e-01 100.0% 36.9%
3991370 246.3.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.66 44.0 3.00e-01 70.9% 25.5%
4530314 375.13.1.0 few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain 0.66 53.0 5.27e-01 90.9% 89.7%
3226293 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.66 54.0 3.42e-01 89.1% 18.8%
3607176 101.17.1.4 alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › HU-CCDC81_euk_2 0.66 39.0 3.44e-01 98.2% 40.2%
3212404 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.66 52.0 3.37e-01 89.1% 18.8%
3968619 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.65 52.0 3.23e-01 85.5% 24.3%
5028466 304.56.1.0 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like 0.65 54.0 4.31e-01 96.4% 91.7%
3222575 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.65 53.0 3.42e-01 89.1% 19.3%
3227136 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.64 52.0 3.46e-01 89.1% 22.9%
3247669 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.64 51.0 3.28e-01 89.1% 18.5%
3242542 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.64 51.0 3.28e-01 89.1% 18.8%
3057485 71.1.1.10 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_3 0.64 45.0 3.29e-01 76.4% 26.6%
3212555 2484.1.1.200 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.64 51.0 3.88e-01 89.1% 36.9%
4276957 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.64 42.0 4.25e-01 74.5% 67.3%
3229102 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.63 50.0 3.27e-01 89.1% 19.2%
4082530 865.1.1.2 beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain › TilS_C 0.62 50.0 4.06e-01 90.9% 71.8%
4998173 319.1.1.4 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 0.61 43.0 3.83e-01 72.7% 57.3%
3244743 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.60 49.0 3.57e-01 87.3% 31.3%
3979711 252.2.1.6 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_2 0.60 48.0 4.62e-01 94.5% 76.9%
4351809 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.60 41.0 4.00e-01 76.4% 65.0%
4940665 9.16.1.0 beta barrels › Lipocalins/Streptavidin › Hypothetical protein Atu4866 › Hypothetical protein Atu4866 0.60 48.0 4.21e-01 87.3% 84.1%
3595430 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.59 48.0 3.22e-01 87.3% 63.5%
4969758 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.59 49.0 4.31e-01 100.0% 100.0%
3215907 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 49.0 3.17e-01 96.4% 23.0%
4890983 6110.1.1.0 alpha superhelices › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain 0.58 47.0 2.76e-01 87.3% 11.4%
81577 880.1.1.1 a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.58 48.0 2.85e-01 92.7% 29.1%
4454944 101.1.2.468 alpha arrays › HTH › HTH › winged helix domain › McbB 0.58 44.0 4.00e-01 83.6% 93.8%
3890410 11.2.1.29 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF4550 0.58 50.0 3.63e-01 100.0% 45.6%
3579987 220.1.1.160 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MADD 0.57 44.0 3.60e-01 87.3% 61.8%
3227356 633.23.1.4 alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_2 0.56 47.0 3.19e-01 94.5% 64.7%
4990499 2003.1.5.32 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Cons_hypoth95 0.56 45.0 2.94e-01 92.7% 34.2%
4862662 5.1.4.36 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.55 47.0 2.89e-01 98.2% 23.0%
5063899 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 45.0 3.14e-01 96.4% 29.5%
4950588 267.1.1.0 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.54 40.0 3.14e-01 78.2% 51.3%
3506401 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 43.0 2.76e-01 94.5% 36.5%
5078886 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.53 46.0 3.66e-01 96.4% 95.5%
4939990 3740.1.1.4 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.52 46.0 2.95e-01 100.0% 53.0%
3212409 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.51 44.0 3.37e-01 100.0% 79.3%
3877107 1170.1.1.3 beta barrels › IL8-related › IL8-related › IL8 › CXCL16 0.50 41.0 3.77e-01 92.7% 92.0%