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LC483177.1__BBK09142.1__X__00028
Bact-VirLC483177.1__BBK09142.1__X__00028
Identity
- Accession:
- LC483177 ↗
- Kingdom:
- phage
Quality
93.4
mean pLDDT
Cluster
View cluster (5 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-113
Domain cluster:
rep: GOV_bin_1711_contig-70_0_prodigal-single.1__X__X__00089__D65-167
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gfaB01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.78 | 39.0 | 5.13e-01 | 81.1% | 87.1% |
| 2eqkA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.76 | 37.0 | 4.54e-01 | 82.0% | 72.6% |
| 3askA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.74 | 40.0 | 5.24e-01 | 82.0% | 95.2% |
| 5ygbA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.74 | 40.0 | 4.65e-01 | 82.0% | 73.8% |
| 1mhnA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 36.0 | 4.81e-01 | 82.0% | 91.5% |
| 4dkcB00 | 1.20.1250.80 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interleukin-34 | 0.71 | 36.0 | 3.18e-01 | 73.0% | 33.8% |
| 1x4tA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.70 | 37.0 | 5.02e-01 | 75.7% | 98.3% |
| 2lccA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 37.0 | 4.47e-01 | 80.2% | 76.3% |
| 8b9zK01 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.70 | 34.0 | 3.71e-01 | 78.4% | 57.1% |
| 2yevA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.69 | 36.0 | 4.38e-01 | 81.1% | 77.0% |
| 6az1E03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 34.0 | 4.20e-01 | 80.2% | 73.6% |
| 3tklB01 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.69 | 37.0 | 4.84e-01 | 73.9% | 93.5% |
| 2fhdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 35.0 | 4.54e-01 | 78.4% | 90.3% |
| 4aifA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.67 | 38.0 | 3.43e-01 | 73.0% | 42.4% |
| 3fnbA01 | 1.20.1440.110 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase | 0.66 | 36.0 | 3.56e-01 | 73.0% | 50.9% |
| 3d36B02 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.66 | 35.0 | 4.59e-01 | 73.9% | 95.1% |
| 1wpaA01 | 6.10.140.340 | Special › Helix non-globular › Helix Hairpins › | 0.65 | 38.0 | 4.03e-01 | 79.3% | 64.6% |
| 3meuB02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 39.0 | 4.65e-01 | 86.5% | 91.9% |
| 2mtqA00 | 1.20.58.130 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 31.0 | 3.64e-01 | 72.1% | 69.9% |
| 2x9xA04 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 30.0 | 4.04e-01 | 77.5% | 98.1% |
| 1w4sA00 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.59 | 40.0 | 3.65e-01 | 81.1% | 53.4% |
| 4bb7B00 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.56 | 42.0 | 3.24e-01 | 85.6% | 37.6% |
| 5z8lA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.55 | 41.0 | 3.98e-01 | 82.9% | 71.4% |
| 7xpkA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.55 | 43.0 | 3.93e-01 | 85.6% | 63.4% |
| 2y39A00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.54 | 38.0 | 3.85e-01 | 85.6% | 72.7% |
| 7cceA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.53 | 42.0 | 3.71e-01 | 85.6% | 59.6% |
| 8jx6A02 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 36.0 | 3.73e-01 | 70.3% | 100.0% |
| 1cv8A00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.52 | 37.0 | 3.18e-01 | 83.8% | 47.4% |
| 6vilA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.52 | 39.0 | 3.58e-01 | 85.6% | 60.7% |
| 4ft4B01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.51 | 42.0 | 3.77e-01 | 86.5% | 80.7% |
| 2q12A00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.51 | 40.0 | 3.12e-01 | 83.8% | 66.1% |
| 5nohA00 | 1.20.120.1350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain | 0.51 | 29.0 | 3.00e-01 | 73.9% | 58.3% |
ECOD (59)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3983659 | 4970.1.1.0 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I | 0.80 | 35.0 | 4.63e-01 | 70.3% | 73.8% |
| 3564972 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.79 | 40.0 | 5.07e-01 | 82.0% | 80.0% |
| 3568329 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.78 | 40.0 | 5.52e-01 | 82.0% | 95.0% |
| 3507146 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.78 | 40.0 | 4.57e-01 | 82.0% | 65.9% |
| 3397137 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.75 | 36.0 | 4.45e-01 | 70.3% | 70.7% |
| 4956630 | 4.11.1.2 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 | 0.74 | 41.0 | 3.61e-01 | 82.9% | 38.7% |
| 4929262 | 4.11.1.2 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 | 0.72 | 42.0 | 3.74e-01 | 82.9% | 41.9% |
| 4214499 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.71 | 39.0 | 4.93e-01 | 75.7% | 87.1% |
| 3646011 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.71 | 37.0 | 4.65e-01 | 74.8% | 81.4% |
| 3629536 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 38.0 | 4.09e-01 | 82.9% | 61.1% |
| 3399701 | 174.1.1.1 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin | 0.68 | 37.0 | 3.41e-01 | 75.7% | 42.1% |
| 3798312 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.67 | 38.0 | 4.74e-01 | 82.9% | 90.0% |
| 3615426 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.67 | 41.0 | 3.65e-01 | 82.0% | 44.7% |
| 3935716 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.67 | 39.0 | 4.66e-01 | 82.9% | 85.3% |
| 3505608 | 192.29.1.1 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB_dom | 0.67 | 38.0 | 4.64e-01 | 75.7% | 85.3% |
| 4883924 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.66 | 37.0 | 4.36e-01 | 74.8% | 77.5% |
| 3607981 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 38.0 | 4.58e-01 | 82.0% | 86.5% |
| 3549321 | 4.11.1.5 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24, PF31032 | 0.65 | 40.0 | 3.49e-01 | 82.9% | 42.5% |
| 3416038 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.65 | 37.0 | 3.56e-01 | 73.9% | 48.5% |
| 3176265 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.64 | 39.0 | 3.49e-01 | 82.0% | 43.9% |
| 4027502 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 36.0 | 4.52e-01 | 83.8% | 93.8% |
| 3967983 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.64 | 36.0 | 4.26e-01 | 79.3% | 78.8% |
| 3927213 | 4.1.1.51 ↗ | beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor | 0.63 | 38.0 | 4.64e-01 | 85.6% | 94.3% |
| 3286637 | 2484.1.1.124 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 | 0.63 | 41.0 | 3.57e-01 | 86.5% | 44.8% |
| 4977429 | 2484.1.1.124 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 | 0.63 | 41.0 | 3.79e-01 | 85.6% | 52.9% |
| 3642421 | 603.1.1.5 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin-6_N | 0.62 | 39.0 | 3.80e-01 | 79.3% | 57.6% |
| 3490245 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 42.0 | 4.71e-01 | 82.9% | 88.9% |
| 3521904 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 42.0 | 4.59e-01 | 82.9% | 85.3% |
| 3803217 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 36.0 | 3.81e-01 | 79.3% | 67.0% |
| 3501834 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 42.0 | 4.76e-01 | 82.0% | 95.3% |
| 3621303 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 42.0 | 3.95e-01 | 82.9% | 63.1% |
| 3679883 | 4.1.1.85 ↗ | beta barrels › SH3 › SH3 › SH3 › MTR4_beta-barrel | 0.58 | 37.0 | 3.86e-01 | 82.0% | 68.6% |
| 3836457 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.58 | 40.0 | 3.58e-01 | 81.1% | 52.7% |
| 3720023 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.57 | 36.0 | 3.80e-01 | 86.5% | 70.0% |
| 3803751 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.57 | 42.0 | 3.32e-01 | 83.8% | 39.5% |
| 4108773 | 142.1.1.1 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r1_2,Sigma70_r2 | 0.56 | 43.0 | 3.07e-01 | 80.2% | 30.2% |
| 3755476 | 3755.1.1.0 ↗ | alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related | 0.56 | 38.0 | 3.25e-01 | 76.6% | 44.0% |
| 3923766 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 42.0 | 4.21e-01 | 83.8% | 76.5% |
| 222003 | 133.1.1.1 ↗ | alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF | 0.54 | 34.0 | 2.88e-01 | 77.5% | 36.6% |
| 5032045 | 4163.1.1.0 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like | 0.54 | 36.0 | 3.81e-01 | 73.0% | 76.0% |
| 3460287 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.54 | 41.0 | 3.62e-01 | 86.5% | 55.6% |
| 3823515 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.54 | 42.0 | 3.69e-01 | 85.6% | 58.1% |
| 3824811 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.53 | 42.0 | 3.68e-01 | 86.5% | 58.1% |
| 3629455 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.53 | 44.0 | 3.58e-01 | 85.6% | 71.6% |
| 3617446 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.53 | 33.0 | 3.43e-01 | 76.6% | 65.7% |
| 3601853 | 604.7.1.0 ↗ | alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A | 0.53 | 39.0 | 3.52e-01 | 76.6% | 74.5% |
| 3510024 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.52 | 40.0 | 4.07e-01 | 81.1% | 80.9% |
| 3474784 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.52 | 41.0 | 3.48e-01 | 82.9% | 59.4% |
| 3870945 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 40.0 | 3.25e-01 | 81.1% | 47.5% |
| 3454181 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.52 | 42.0 | 3.49e-01 | 86.5% | 52.2% |
| None | — | 0.52 | 40.0 | 3.42e-01 | 81.1% | 59.4% | |
| 3411108 | 174.1.1.1 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin | 0.51 | 36.0 | 3.40e-01 | 73.0% | 98.5% |
| 3956669 | 2484.1.1.124 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 | 0.51 | 39.0 | 3.26e-01 | 79.3% | 66.7% |
| 3955489 | 2484.1.1.211 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605, Cas12f1-like_TNB | 0.51 | 40.0 | 3.17e-01 | 81.1% | 87.6% |
| 4173456 | 2484.1.1.211 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605, Cas12f1-like_TNB | 0.51 | 39.0 | 3.22e-01 | 81.1% | 89.2% |
| 4581983 | 5086.1.1.13 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › T3SSipB | 0.51 | 39.0 | 3.64e-01 | 82.0% | 83.6% |
| 3249408 | 133.1.1.1 ↗ | alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF | 0.50 | 36.0 | 2.92e-01 | 74.8% | 70.5% |
| 4541195 | 3755.3.1.470 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › T3SSipB | 0.50 | 39.0 | 3.75e-01 | 82.9% | 90.0% |
| 4485576 | 1.1.17.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_S64 | 0.50 | 37.0 | 2.83e-01 | 79.3% | 84.8% |