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LC483177.1__BBK09211.1__X__00097
Bact-VirLC483177.1__BBK09211.1__X__00097
Identity
- Accession:
- LC483177 ↗
- Kingdom:
- phage
Quality
57.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 99-183
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ml8A01 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.63 | 23.0 | 3.41e-01 | 76.5% | 76.5% |
| 1dp3A00 | 1.10.10.450 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › TraM protein, DNA-binding | 0.57 | 32.0 | 3.73e-01 | 82.4% | 81.8% |
| 1vlaA01 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.57 | 22.0 | 3.02e-01 | 76.5% | 61.9% |
| 1d1lA00 | 3.30.240.10 | Alpha Beta › 2-Layer Sandwich › CRO Repressor › CRO Repressor | 0.56 | 36.0 | 4.11e-01 | 76.5% | 90.2% |
| 1j09A04 | 1.10.8.70 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 | 0.56 | 31.0 | 3.80e-01 | 89.4% | 93.8% |
| 3on3B00 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.56 | 48.0 | 3.90e-01 | 98.8% | 80.0% |
| 2cw8A03 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.56 | 34.0 | 2.78e-01 | 100.0% | 30.8% |
| 1qmiA02 | 3.30.360.20 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › RNA 3'-terminal phosphate cyclase, insert domain | 0.54 | 43.0 | 4.25e-01 | 94.1% | 81.3% |
| 5nr1A01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.52 | 44.0 | 4.08e-01 | 98.8% | 73.6% |
| 1oe8A01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.52 | 43.0 | 4.48e-01 | 98.8% | 97.5% |
| 2gs8A02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.51 | 36.0 | 3.15e-01 | 75.3% | 62.9% |
| 1gefA00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.51 | 41.0 | 3.73e-01 | 90.6% | 93.3% |
| 3paoB00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.50 | 38.0 | 2.63e-01 | 82.4% | 83.1% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5000411 | 2004.1.3.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR | 0.57 | 49.0 | 3.88e-01 | 98.8% | 82.6% |
| 5070210 | 2004.1.3.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR | 0.56 | 49.0 | 3.81e-01 | 98.8% | 84.1% |
| 3944117 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.54 | 45.0 | 3.69e-01 | 90.6% | 86.7% |
| 3342336 | 109.1.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C | 0.53 | 39.0 | 3.11e-01 | 78.8% | 85.6% |
| 2524015 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.51 | 42.0 | 4.18e-01 | 94.1% | 85.4% |
| 3853513 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.50 | 38.0 | 2.77e-01 | 83.5% | 93.9% |
| 3981752 | 829.1.1.1 ↗ | a+b duplicates or obligate multimers › NinB › NinB › NinB › NinB | 0.50 | 29.0 | 2.60e-01 | 83.5% | 36.2% |
D2
high
residues 210-295
D3
medium
residues 3-95