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LC483177.1__BBK09324.1__X__00210

Bact-Vir

LC483177.1__BBK09324.1__X__00210

Identity

Accession:
LC483177 ↗
Kingdom:
phage

Quality

84.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Klebsiella_phage_05F01

TaxID: 2583037

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-68
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2d9vA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 56.0 4.55e-01 100.0% 91.7%
1h4rA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 55.0 4.63e-01 98.1% 85.7%
2dk7A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.63 51.0 4.70e-01 100.0% 69.9%
7fjlA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.63 45.0 3.42e-01 77.8% 70.1%
5cmlA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.62 54.0 3.53e-01 100.0% 34.6%
3rr1A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.62 50.0 3.85e-01 94.4% 81.8%
7obmA02 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.62 53.0 3.43e-01 100.0% 37.7%
4hvtA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.61 53.0 3.30e-01 100.0% 31.8%
6canA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.61 53.0 3.32e-01 100.0% 32.1%
3qijB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 53.0 4.50e-01 100.0% 86.5%
2q18X01 3.10.330.40 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.59 50.0 4.70e-01 100.0% 81.4%
7byjA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 49.0 4.19e-01 98.1% 89.5%
3weeA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.59 50.0 3.51e-01 100.0% 81.4%
7dpyB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.58 47.0 4.18e-01 94.4% 98.8%
3oe3C00 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.58 46.0 4.04e-01 92.6% 76.1%
4dsdA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.58 40.0 3.13e-01 74.1% 57.9%
3h8zA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 42.0 4.44e-01 100.0% 89.6%
3h04A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 48.0 3.11e-01 100.0% 32.4%
3b79A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.57 46.0 3.64e-01 94.4% 40.8%
2qcuA02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.56 47.0 3.45e-01 100.0% 36.6%
3r7wB02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.55 48.0 3.79e-01 100.0% 94.9%
3vcaA02 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.55 38.0 3.14e-01 77.8% 80.7%
4e4fA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 43.0 3.33e-01 94.4% 78.7%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 40.0 4.08e-01 100.0% 84.9%
1sjgA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.54 45.0 3.69e-01 98.1% 74.1%
1i7dA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.54 45.0 3.37e-01 94.4% 86.5%
1q90C00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.54 44.0 3.54e-01 100.0% 65.1%
7q04F01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.53 43.0 3.57e-01 98.1% 88.1%
4kcaA02 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 44.0 2.72e-01 100.0% 43.5%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.52 33.0 3.34e-01 72.2% 62.5%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 43.0 4.10e-01 100.0% 78.8%
3zpeA00 2.60.90.50 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.52 43.0 3.34e-01 100.0% 76.1%
1pg5B02 2.30.30.20 Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain 0.51 36.0 3.65e-01 81.5% 98.2%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4192402 219.1.1.79 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core2 0.71 52.0 3.62e-01 79.6% 25.5%
5018514 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 59.0 4.45e-01 96.3% 97.0%
4217957 219.1.1.79 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core2 0.68 57.0 4.07e-01 94.4% 35.8%
3535572 239.3.1.1 ↗ beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin 0.61 43.0 3.25e-01 75.9% 40.0%
3924073 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 51.0 4.20e-01 100.0% 85.7%
3972956 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.59 46.0 3.41e-01 94.4% 32.4%
3594372 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.58 51.0 2.91e-01 100.0% 15.3%
4011458 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 48.0 3.52e-01 98.1% 72.7%
3781064 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.56 46.0 4.34e-01 100.0% 92.9%
3939208 5.1.4.254 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_NOL10_N 0.56 48.0 2.95e-01 98.1% 17.1%
4204341 5.1.4.74 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Vps16_N 0.56 48.0 2.91e-01 100.0% 37.8%
3878170 5.1.4.549 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF28327 0.56 47.0 2.94e-01 96.3% 18.2%
3332664 5.1.11.11 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › WD40 0.56 47.0 2.81e-01 100.0% 21.0%
3348260 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 47.0 2.99e-01 100.0% 31.0%
3222570 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 45.0 3.71e-01 100.0% 88.7%
3827487 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 48.0 2.93e-01 100.0% 18.6%
3197280 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 46.0 2.88e-01 100.0% 39.1%
3432796 5.1.10.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.55 47.0 4.16e-01 98.1% 81.2%
3685569 6.1.1.0 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.55 39.0 3.26e-01 81.5% 63.5%
None — 0.55 46.0 2.82e-01 100.0% 30.5%
3392759 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 47.0 2.87e-01 100.0% 30.1%
3622841 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 46.0 2.82e-01 100.0% 35.0%
4355548 558.1.1.26 ↗ alpha duplicates or obligate multimers › Lis-homology dimerization domain › Lis-homology dimerization domain › Lis-homology dimerization domain › WD40 0.54 46.0 2.74e-01 100.0% 26.4%
3743052 5.1.4.78 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › TFIIIC_delta 0.54 45.0 2.73e-01 100.0% 34.7%
3341382 5.1.4.411 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, DUF2415 0.54 46.0 2.80e-01 100.0% 22.0%
3684518 304.107.1.0 ↗ a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain 0.53 43.0 3.43e-01 100.0% 43.5%
3994644 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 45.0 2.51e-01 100.0% 11.4%
3229131 5.1.5.18 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Vps16_N 0.53 44.0 2.86e-01 100.0% 34.3%
3668377 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 44.0 2.62e-01 100.0% 36.2%
3621408 5.1.4.74 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Vps16_N 0.52 43.0 2.74e-01 100.0% 28.9%
3782489 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 41.0 2.47e-01 100.0% 25.7%
3539509 219.1.1.54 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C98 0.50 40.0 2.69e-01 98.1% 91.4%
3655121 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.50 42.0 2.50e-01 98.1% 23.5%